Gene detail information of Glyur000077s00006690.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G34880.14.00E-129Amidase family protein
NRXP_004505809.10PREDICTED: putative amidase C869.01-like [Cicer arietinum]
COGYP_003321515.12.00E-109Amidase [Sphaerobacter thermophilus DSM 20745]
Swissprottr|B6U151|GATA_MAIZE2.00E-32Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial {ECO:0000255|HAMAP-Rule:MF_03150} (Precursor)
trEMBLtr|A0A072ULF6|A0A072ULF6_MEDTR0Amidase C869.01-like protein, putative {ECO:0000313|EMBL:KEH30532.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0007798466101934-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01426E3.5.1.4, amiE EC:3.5.1.4 Arginine and proline metabolism map00330
Phenylalanine metabolismmap00360
Tryptophan metabolismmap00380
Aminobenzoate degradationmap00627
Styrene degradationmap00643


Gene Ontology

molecular_function

GO:0016884  carbon-nitrogen ligase activity, with glutamine as amido-N-donor



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000077s00006690.1PF01425.16Amidase605014.50E-75


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.578
SRR1783600control7.751
SRR1783602moderate drought stress2.260
SRR1811619moderate drought stress2.288

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.824
DRR006520Root Summer glycyrrhizin high producing strain1.890
DRR006521Root Winter glycyrrhizin high producing strain19.910
DRR006522Root Winter glycyrrhizin high producing strain18.624
DRR006523Root Summer glycyrrhizin low producing strain1.229
DRR006524Root Summer glycyrrhizin low producing strain1.313
DRR006525Leaf Summer glycyrrhizin high producing strain3.351
DRR006526Leaf Summer glycyrrhizin high producing strain3.518

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)33.710
SRR2868004Drought Stress(Tissue:root)40.345
SRR2967015Control (Tissue:root)34.494

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.386
SRR9715740Leave7.504
SRR9715741Leave24.942
SRR9715739Root3.055
SRR9715742Root14.126
SRR9715743Root11.840

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h64.010
SRR8749028MeJA induced 9h118.977
SRR8749029MeJA induced 9h87.338
SRR8749030Uninduced338.310
SRR8749031Uninduced246.493
SRR8749032Uninduced233.228

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.052
SRR8400027Control-Root12.025

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved