Gene detail

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Gene detail information of Glyur000077s00006698.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G21200.1	9.00E-90	gibberellin 2-oxidase 8
NR	XP_004505762.1	0	PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Cicer arietinum]
COG	YP_509082.1	6.00E-27	2OG-Fe(II) oxygenase [Jannaschia sp. CCS1]
Swissprot	tr\|O49561\|G2OX8_ARATH	1.00E-109	Gibberellin 2-beta-dioxygenase 8
trEMBL	tr\|A0A072UXE4\|A0A072UXE4_MEDTR	0	Gibberellin 2-beta-dioxygenase {ECO:0000313\|EMBL:KEH30540.1}

Sequence

Transcript Sequence

>Glyur000077s00006698.1
ATGATCGACTCAAATCCACCACTCATGCACCATTATGGAGCCCTTTTGAGAAATTCTTCTGAACCCCAAAAGGCTANAAGTTTTTTCAATGATCATCAAAACCACCATCATCATCCTGTGGTGGATGCATGTGAACTACCCTTGATAGACCTTAATGGTCTTAAAAGTTGTGACCAAAGAGAGAGACTTGCTTGCACTGCAGCAATATGCAAGGCAGCATCAGAATGGGGATTTTTCCAAGTTATAAACCATGGGATAAACCCTGAACTACTGAGAAATATGAGGGAGGAGCAAGTGAAGTTGTTTAGGGTACCCTTTGAGAAGAAGGTCACTTGTGGGATTCTAAATGATCCATATAGGTGGGGGACACCAACAGCTACTCGTTCAAATCAGTTCTCTTGGTCAGAAGCTTTCCACATTCCTCTCACCATGATTTCAGAAGCTGCTTGCTGGGGTGAATTCAGTTCTTTAAGGGAAGCAATAAATGAGTTTGCACCAGCTATGTTAGAAGTGTCTAGGTTATTGGCAGGCATTCTAGCAGAAAACTTGGGCCACCCAACAGATGCAGTTGAAAAACTGTGTGATGCCAGCACATGCTTTCTGAGATTGAATCACTATCCCTCCTGCCCAAAATCTAAAGATGAAATCTTTGGACTAGTGCCTCACACTGACAGTGATTTCCTTACAATACTCTATCAAGATCAAGTCGGTGGACTCCAACTCATGAAAGATTCCAAATGGGTTGCTGTAAAACCAAACCCAGATGCTCTCATTGCTTGGAGTAATGATAAGTACAAAAGCGTGGAGCACAAGGTGGTGGCAAATGACAAAATGGAAAGATACTCCATTGCATACTTCCTATGCCCTTCTTACAATACCATGATAAGCGGCTGCAAAGAACCTTCTGTGTATAGGAAGTTCACATTTGGAGAATACCGACACCAAATTCAAGATGATGTCAAGAAAATAGGACACAAAATTGGACTATCGAGATTTCTACGTTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00077	154959	157554	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04125	E1.14.11.13	EC:1.14.11.13	Diterpenoid biosynthesis	map00904

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function GO:0016491 oxidoreductase activity GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000077s00006698.1	PF14226.1	DIOX_N	46	140	5.50E-17
Glyur000077s00006698.1	PF03171.15	2OG-FeII_Oxy	201	289	1.80E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.204
SRR1783600	control	0.163
SRR1783602	moderate drought stress	0.075
SRR1811619	moderate drought stress	0.075

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.107
DRR006520	Root Summer glycyrrhizin high producing strain	0.089
DRR006521	Root Winter glycyrrhizin high producing strain	0.908
DRR006522	Root Winter glycyrrhizin high producing strain	0.779
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.244
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.276

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.323
SRR2868004	Drought Stress(Tissue:root)	0.296
SRR2967015	Control (Tissue:root)	0.090

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.201
SRR9715740	Leave	0.257
SRR9715741	Leave	0.279
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.960
SRR8749028	MeJA induced 9h	0.582
SRR8749029	MeJA induced 9h	0.540
SRR8749030	Uninduced	1.041
SRR8749031	Uninduced	1.111
SRR8749032	Uninduced	0.657

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.625
SRR8400027	Control-Root	0.386