Gene detail information of Glyur000077s00006711.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G18630.17.00E-110uracil dna glycosylase
NRXP_006592056.10PREDICTED: uracil-DNA glycosylase-like isoform X2 [Glycine max]
COGYP_003122406.17.00E-90uracil-DNA glycosylase [Chitinophaga pinensis DSM 2588]
trEMBLtr|I1LPL1|I1LPL1_SOYBN0Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_03166}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00077234896239361+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03648UNG, UDG EC:3.2.2.27 Base excision repair map03410
Primary immunodeficiencymap05340


Gene Ontology

biological_process

GO:0006281  DNA repair

GO:0006284  base-excision repair


molecular_function

GO:0004844  uracil DNA N-glycosylase activity

GO:0016799  hydrolase activity, hydrolyzing N-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000077s00006711.1PF03167.14UDG1412963.80E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.123
SRR1783600control13.101
SRR1783602moderate drought stress12.700
SRR1811619moderate drought stress12.340

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.487
DRR006520Root Summer glycyrrhizin high producing strain9.006
DRR006521Root Winter glycyrrhizin high producing strain4.576
DRR006522Root Winter glycyrrhizin high producing strain4.465
DRR006523Root Summer glycyrrhizin low producing strain8.881
DRR006524Root Summer glycyrrhizin low producing strain8.740
DRR006525Leaf Summer glycyrrhizin high producing strain3.089
DRR006526Leaf Summer glycyrrhizin high producing strain3.304

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.862
SRR2868004Drought Stress(Tissue:root)12.510
SRR2967015Control (Tissue:root)10.532

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.608
SRR9715740Leave6.043
SRR9715741Leave3.751
SRR9715739Root5.031
SRR9715742Root6.832
SRR9715743Root6.024

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h28.567
SRR8749028MeJA induced 9h13.454
SRR8749029MeJA induced 9h12.265
SRR8749030Uninduced4.420
SRR8749031Uninduced1.684
SRR8749032Uninduced2.707

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.697
SRR8400027Control-Root14.262

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved