Gene detail information of Glyur000077s00006727.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G50200.10Alanyl-tRNA synthetase
NRXP_004505726.10PREDICTED: alanine--tRNA ligase-like [Cicer arietinum]
COGYP_005445253.10alanyl-tRNA synthetase [Phycisphaera mikurensis NBRC 102666]
Swissprottr|P36428|SYA_ARATH0Alanine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_03133} (Precursor)
trEMBLtr|G7JNH3|G7JNH3_MEDTR0Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_03133}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00077331239342278+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01872AARS, alaS EC:6.1.1.7 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006419  alanyl-tRNA aminoacylation

GO:0043039  tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0003676  nucleic acid binding

GO:0004813  alanine-tRNA ligase activity

GO:0005524  ATP binding

GO:0016876  ligase activity, forming aminoacyl-tRNA and related compounds

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000077s00006727.2PF01411.14tRNA-synt_2c556235.40E-217
Glyur000077s00006727.2PF07973.9tRNA_SAD7237811.40E-17
Glyur000077s00006727.2PF02272.14DHHA19129798.30E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control30.509
SRR1783600control30.504
SRR1783602moderate drought stress24.634
SRR1811619moderate drought stress24.216

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain35.804
DRR006520Root Summer glycyrrhizin high producing strain35.619
DRR006521Root Winter glycyrrhizin high producing strain25.997
DRR006522Root Winter glycyrrhizin high producing strain24.472
DRR006523Root Summer glycyrrhizin low producing strain33.215
DRR006524Root Summer glycyrrhizin low producing strain33.370
DRR006525Leaf Summer glycyrrhizin high producing strain59.104
DRR006526Leaf Summer glycyrrhizin high producing strain58.221

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)63.587
SRR2868004Drought Stress(Tissue:root)55.092
SRR2967015Control (Tissue:root)63.791

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave56.073
SRR9715740Leave61.082
SRR9715741Leave64.296
SRR9715739Root7.461
SRR9715742Root36.217
SRR9715743Root31.638

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h83.302
SRR8749028MeJA induced 9h85.096
SRR8749029MeJA induced 9h64.517
SRR8749030Uninduced25.802
SRR8749031Uninduced29.711
SRR8749032Uninduced26.280

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root52.550
SRR8400027Control-Root49.421

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved