Gene detail

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Gene detail information of Glyur000078s00005387.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G34460.1	5.00E-160	GTP binding protein beta 1
NR	XP_003603911.1	0	Guanine nucleotide-binding protein subunit beta-1 [Medicago truncatula]
COG	YP_004451364.1	2.00E-36	WD40 repeat-containing protein [Haliscomenobacter hydrossis DSM 1100]
Swissprot	tr\|P93397\|GBB1_TOBAC	0	Guanine nucleotide-binding protein subunit beta-1
trEMBL	tr\|G7J6K3\|G7J6K3_MEDTR	0	Guanine nucleotide-binding protein beta subunit-like protein {ECO:0000313\|EMBL:AES74162.1}

Sequence

Transcript Sequence

>Glyur000078s00005387.1
ACACCAGTCTTCATCACTTCAACTTGAACAATTCATTCTCCTCTTCTCTTCTCCTCTCCTCTCCTCTCCTCTCAGCACAATTCACGTTTTCTTTCTCCGATAAGCACAATAACCGTTTCTATTTTTCTATCTATTTTTTTTCTTCTAAATAAACAAATAAATCTGACCGAAACACTCGCTAGTTCGCGTGCAATGGAACATGTAGATTGATTAGATTAGATTAGGTCAATTCATCCATCGATTCACAGGCAGAGGAATAATTAAGACCTAAGAATAGAAAAGATGTCCGTTACGGANCTGAAGGAGCGTCACTTGGCGGCGACGGAGACCGTTAACAATCTCAGGGAGCGCTTGAAGCAGAGGCGCCTCTCTTTGCTCGATACAGATATTGCTGGTTACGCGAGGTCTCAGGGTAGAACTCCTGTCACCTTCGGACCTACCGATATCCTTTGCTGTAGAACGCTCCAAGGCCACACCGGAAAGAATCGAATTGTTAGTGCATCCCAAGACGGACGATTAATAGTCTGGAATGCTCTAACAAGCCAGAAAACTCATGCCATAAAGCTTCCTTGTGCATGGGTCATGACGTGTGCTTTCTCACCAACTGGTCAATCTGTCGCATGCGGTGGCCTTGACAGTGTTTGCTCTATTTTCAATCTTAATTCCCCCACTGATAGGGATGGAAATCTAAATGTTTCGCGGATGCTTAGTGGACATAAAGGTTATGTTTCTTCTTGTCAGTATGTTCCAGGTGAAGACACTCACTTAATTACTGGTTCTGGTGATCAGACATGTGTTTTATGGGATATTACTACTGGCCTTAGAACATCTGTTTTCGGAGGTGAATTTCACATTTCAATTAATGGATCCAACCCCAAAATGTTTGTATCTGGTTCTTGTGATGCAACTGCCAGACTGTGGGACACTCGTGTGGCAAGTCGAGCAGTGCGGACATTTCATGGGCACGAGGGAGATGTTAATACTGTCAAATTCTTTCCTGATGGAAATAGATTTGGAACTGGCTCAGATGATGGAACTTGCAGATTGTTTGACATTAGGACTGGGCACCAACTTCAAGTATATCATCAGCAACACAGTGACAGTGGAATCACACACGTGACCTCCATTGCATTCTCCATATCTGGAAGACTTCTTTTTGCTGGATATACAAATGGTGATTGCTATGTTTGGGACACTTTATTAGCAAAGGTGGTCTTGGATCTAGGATCTCTTCAAAACTCTCATGAGGGAAGGATCAGCTGTTTAGGTTTGTCAGCTGACGGAAGTGCTTTGTGTACAGGAAGTTGGGACACAAATTTAAAGATATGGGCATTTGGAGGGCACAGGAAGGTGATTTGAGCCATTAACGGGGCAAAGACTCGTACTTTGACTCCCTTTGTCAGGGTCACTCTTTGTAGGGTATTGTCCAGTAGTGATGCTTGGGATGGTCAATTTGGAGAAAAATTGGACGGCAAAGTTTCTAACCTTTAGCGATGCAACTAGTGCAGCGGTTGTTTATCCCCATGCCCATTGGTTCGTGTGTGTGATACCTATACCTTAATACCTTTAAACCAAAACGAAGGACTATTTACTTTCCCGCCTCCACAATTTAACTATTTGAAGATGTAACAACACATNAAGACCTACTTCTGCCTTAAACAGTTAAACCGTGCGGCGAGGAATGGTAGAGTGGCAGACAAATGGTGTTTAATTGAAAGTGAGTTTGCTGATGCCGTTGGATTACAAAAGTGAAAAACCTAACGTCTATATCTGTATAAATTAAAACTTGAATAAAATGAATGAGACGATAGATTTTGTCTCAAGTATTTATACATGAGAAATTACCAAGACAATCTTTTTCAGGNGCTATTATAATCTAGGAATAGGATACTTGAAGGAAAAAAGGAAGAAAATAACAATCTTTCTATCGTAAACGATTGCTGTTCAACAAGTATCCAATTCATTGAGGACACAAACATTGATCAAGGCAAATCCTCAAAATTCATATTACATTCACTACACGGAAAAATGAAGTATAATCAATGAGGAAGTGCAGTCCAATAGGCCCGACGTTATACTTCCAGTATCGTTGATTCGTTGCTAGTCTAACAAGAATGCAGTGAGTGAGTGAGGGACAAACAAATGCGTACTGAGAGCCCAAACGTACAATTTTGGTAATTCTTTACACACGTCTATCTATGTGCCTGCTTAACTCCAATCTCATTAACAAAAAGGGAGCCGAATTNTGAGTCAAAAATTTCTTTACTAAATGGATTATCCGCTTGCCACAATCTCGTGAATGGCATCGCTGACCGTTTCATCCTCGGATCTGACAGCCAGTTTCATTGCAACATCCTTTGGACCGTCAAGTCCAAAAGACAACNGCACAAGCACTTTTACATTCCCTATGAATACACCCGACAACAAACATGTGTGTGATCTTGAATTNGGTGGAACAACCTCTGTGCCCTGCACAGCCCCACAAATAAAAATTATAAGATATCACCTTCCAGAAAATAACAGTGAATGTAAGATCACCTTGCCNTGTTCATAATCAGTTTAATAAAATAAGTGTGTTAGTGGTTAGGGCATTGGTAATTACTAATTAACTAGAACTCAAGAAGTCATAGATTCAAAACATTGTGCAACCATTGTACACAAACACAGATAAAAAATAAATAAAATGGTCTCACGAACAGTTATCAAATCAACAAGTAACATCATTGGCTTACCTCACATGGCTGCAAGCCAAGAAGGTTGATGACAGTATTTACAGCTTCAGCCAAGTTCTCCCTAGGACCAAGACCATACTCATCAACTCGCTCGCAATCAGGGCCCATGCTTTCCCACGCATTCCTGAAATTAGATACCCCCACTTTCAATATGTAATCTGCTGCAACAACCTCCAGATCCTCCAGCTGGTATTCATCTTCAACACCATCATCTTCAGCCTCACCAGTGGT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00078	108627	115119	-

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000078s00005387.1	PF00400.27	WD40	98	125	0.007
Glyur000078s00005387.1	PF00400.27	WD40	140	175	1.50E-06
Glyur000078s00005387.1	PF00400.27	WD40	194	214	0.0073
Glyur000078s00005387.1	PF00400.27	WD40	222	257	8.80E-11
Glyur000078s00005387.1	PF00400.27	WD40	279	304	0.11
Glyur000078s00005387.1	PF00400.27	WD40	320	349	6.10E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.983
SRR1783600	control	20.165
SRR1783602	moderate drought stress	17.245
SRR1811619	moderate drought stress	16.989

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.222
DRR006520	Root Summer glycyrrhizin high producing strain	32.001
DRR006521	Root Winter glycyrrhizin high producing strain	23.236
DRR006522	Root Winter glycyrrhizin high producing strain	21.988
DRR006523	Root Summer glycyrrhizin low producing strain	27.399
DRR006524	Root Summer glycyrrhizin low producing strain	26.417
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.688
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.046

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	28.617
SRR2868004	Drought Stress(Tissue:root)	31.742
SRR2967015	Control (Tissue:root)	27.865

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	28.764
SRR9715740	Leave	28.769
SRR9715741	Leave	42.349
SRR9715739	Root	14.464
SRR9715742	Root	23.341
SRR9715743	Root	21.830

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.862
SRR8749028	MeJA induced 9h	18.196
SRR8749029	MeJA induced 9h	26.754
SRR8749030	Uninduced	22.401
SRR8749031	Uninduced	19.019
SRR8749032	Uninduced	18.852

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	22.780
SRR8400027	Control-Root	26.349