Gene detail information of Glyur000078s00005388.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G34480.11.00E-178O-Glycosyl hydrolases family 17 protein
NRXP_003603912.10Glucan endo-1,3-beta-glucosidase [Medicago truncatula]
Swissprottr|Q9M069|E137_ARATH0Glucan endo-1,3-beta-glucosidase 7 (Precursor)
trEMBLtr|G7J6K5|G7J6K5_MEDTR0Glucan endo-1,3-beta-glucosidase-like protein {ECO:0000313|EMBL:AES74163.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00078119707123440-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH17


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000078s00005388.1PF00332.13Glyco_hydro_17293463.50E-88
Glyur000078s00005388.1PF07983.8X83724411.40E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control232.682
SRR1783600control233.175
SRR1783602moderate drought stress208.756
SRR1811619moderate drought stress207.063

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain89.521
DRR006520Root Summer glycyrrhizin high producing strain88.582
DRR006521Root Winter glycyrrhizin high producing strain16.799
DRR006522Root Winter glycyrrhizin high producing strain16.095
DRR006523Root Summer glycyrrhizin low producing strain129.025
DRR006524Root Summer glycyrrhizin low producing strain128.447
DRR006525Leaf Summer glycyrrhizin high producing strain67.210
DRR006526Leaf Summer glycyrrhizin high producing strain66.955

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)46.805
SRR2868004Drought Stress(Tissue:root)33.389
SRR2967015Control (Tissue:root)28.712

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave133.275
SRR9715740Leave39.650
SRR9715741Leave96.532
SRR9715739Root359.822
SRR9715742Root370.989
SRR9715743Root358.165

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h82.801
SRR8749028MeJA induced 9h67.927
SRR8749029MeJA induced 9h92.929
SRR8749030Uninduced34.971
SRR8749031Uninduced28.627
SRR8749032Uninduced26.607

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root118.010
SRR8400027Control-Root230.087

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved