Gene detail information of Glyur000078s00005395.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G19440.18.00E-1703-ketoacyl-CoA synthase 4
NRXP_007136167.10hypothetical protein PHAVU_009G023600g [Phaseolus vulgaris]
COGNP_285649.12.00E-12chalcone synthase [Deinococcus radiodurans R1]
Swissprottr|Q9LN49|KCS4_ARATH03-ketoacyl-CoA synthase 4
trEMBLtr|V7AVD2|V7AVD2_PHAVU03-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00078158934164316-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15397KCS EC:2.3.1.199 Fatty acid elongation map00062


Gene Ontology

biological_process

GO:0006633  fatty acid biosynthetic process

GO:0008152  metabolic process

GO:0008610  lipid biosynthetic process


cellular_component

GO:0016020  membrane


molecular_function

GO:0003824  catalytic activity

GO:0016747  transferase activity, transferring acyl groups other than amino-acyl groups

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000078s00005395.1PF08392.7FAE1_CUT1_RppA12051.10E-109
Glyur000078s00005395.1PF08541.5ACP_syn_III_C2233035.70E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control30.138
SRR1783600control19.971
SRR1783602moderate drought stress35.300
SRR1811619moderate drought stress32.735

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain52.944
DRR006520Root Summer glycyrrhizin high producing strain63.177
DRR006521Root Winter glycyrrhizin high producing strain91.084
DRR006522Root Winter glycyrrhizin high producing strain80.298
DRR006523Root Summer glycyrrhizin low producing strain129.496
DRR006524Root Summer glycyrrhizin low producing strain118.485
DRR006525Leaf Summer glycyrrhizin high producing strain37.985
DRR006526Leaf Summer glycyrrhizin high producing strain30.452

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)48.527
SRR2868004Drought Stress(Tissue:root)53.053
SRR2967015Control (Tissue:root)107.825

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.820
SRR9715740Leave21.218
SRR9715741Leave24.116
SRR9715739Root32.461
SRR9715742Root36.776
SRR9715743Root39.004

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h32.780
SRR8749028MeJA induced 9h36.746
SRR8749029MeJA induced 9h46.790
SRR8749030Uninduced51.679
SRR8749031Uninduced46.807
SRR8749032Uninduced45.348

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root33.383
SRR8400027Control-Root41.491

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved