Gene detail information of Glyur000078s00005400.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G34530.1 | 1.00E-42 | cryptochrome-interacting basic-helix-loop-helix 1 |
| NR | XP_003522925.1 | 8.08E-154 | PREDICTED: transcription factor bHLH63-like [Glycine max] |
| Swissprot | tr|Q8GY61|BH063_ARATH | 3.00E-49 | Transcription factor bHLH63 |
| trEMBL | tr|I1JSN9|I1JSN9_SOYBN | 3.00E-154 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G01400.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00078 | 183019 | 185321 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000078s00005400.1 | PF00010.21 | HLH | 237 | 283 | 7.30E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.398 |
| SRR1783600 | control | 1.384 |
| SRR1783602 | moderate drought stress | 1.416 |
| SRR1811619 | moderate drought stress | 1.398 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.181 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.210 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.070 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.068 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.215 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.295 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.815 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.635 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.115 |
| SRR2967015 | Control (Tissue:root) | 4.877 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 13.321 |
| SRR9715740 | Leave | 6.305 |
| SRR9715741 | Leave | 12.404 |
| SRR9715739 | Root | 0.991 |
| SRR9715742 | Root | 2.901 |
| SRR9715743 | Root | 1.349 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.749 |
| SRR8749028 | MeJA induced 9h | 1.224 |
| SRR8749029 | MeJA induced 9h | 1.862 |
| SRR8749030 | Uninduced | 0.106 |
| SRR8749031 | Uninduced | 0.046 |
| SRR8749032 | Uninduced | 0.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.455 |
| SRR8400027 | Control-Root | 1.661 |