Gene detail information of Glyur000078s00005429.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G34570.10thymidylate synthase 2
NRKEH25100.10dihydrofolate reductase-thymidylate synthase-like protein [Medicago truncatula]
COGYP_005607786.11.00E-92thymidylate synthase [Bradyrhizobium japonicum USDA 6]
Swissprottr|P51820|DRTS_SOYBN0Thymidylate synthase
trEMBLtr|A0A072UH24|A0A072UH24_MEDTR0Bifunctional dihydrofolate reductase-thymidylate synthase {ECO:0000256|PIRNR:PIRNR000389}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00078284972288908-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13998DHFR-TS EC:1.5.1.3 2.1.1.45 Pyrimidine metabolism map00240
Folate biosynthesismap00790
One carbon pool by folatemap00670


Gene Ontology

biological_process

GO:0006231  dTMP biosynthetic process

GO:0006545  glycine biosynthetic process

GO:0006730  one-carbon metabolic process

GO:0009165  nucleotide biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004146  dihydrofolate reductase activity

GO:0004799  thymidylate synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000078s00005429.1PF00186.14DHFR_1592321.20E-39
Glyur000078s00005429.1PF00303.14Thymidylat_synt2785505.30E-112


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.414
SRR1783600control1.557
SRR1783602moderate drought stress0.883
SRR1811619moderate drought stress0.872

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.585
DRR006520Root Summer glycyrrhizin high producing strain2.541
DRR006521Root Winter glycyrrhizin high producing strain1.177
DRR006522Root Winter glycyrrhizin high producing strain1.113
DRR006523Root Summer glycyrrhizin low producing strain1.484
DRR006524Root Summer glycyrrhizin low producing strain1.216
DRR006525Leaf Summer glycyrrhizin high producing strain1.561
DRR006526Leaf Summer glycyrrhizin high producing strain1.418

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.448
SRR2868004Drought Stress(Tissue:root)6.052
SRR2967015Control (Tissue:root)5.585

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.075
SRR9715740Leave2.399
SRR9715741Leave2.902
SRR9715739Root2.436
SRR9715742Root2.117
SRR9715743Root1.536

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.366
SRR8749028MeJA induced 9h4.220
SRR8749029MeJA induced 9h2.065
SRR8749030Uninduced1.022
SRR8749031Uninduced0.508
SRR8749032Uninduced1.006

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.652
SRR8400027Control-Root8.528

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved