Gene detail information of Glyur000078s00005443.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G39140.5 | 3.00E-73 | RING/U-box superfamily protein |
| NR | XP_003522888.1 | 0 | PREDICTED: uncharacterized protein LOC100778123 [Glycine max] |
| trEMBL | tr|I1JSL5|I1JSL5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G01190.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00078 | 357189 | 361685 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.200 |
| SRR1783600 | control | 8.095 |
| SRR1783602 | moderate drought stress | 13.438 |
| SRR1811619 | moderate drought stress | 13.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.882 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.809 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.966 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 28.560 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.911 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.090 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.559 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.579 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 23.105 |
| SRR2868004 | Drought Stress(Tissue:root) | 26.551 |
| SRR2967015 | Control (Tissue:root) | 28.947 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.952 |
| SRR9715740 | Leave | 14.620 |
| SRR9715741 | Leave | 18.065 |
| SRR9715739 | Root | 6.003 |
| SRR9715742 | Root | 14.374 |
| SRR9715743 | Root | 14.449 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.432 |
| SRR8749028 | MeJA induced 9h | 17.526 |
| SRR8749029 | MeJA induced 9h | 12.064 |
| SRR8749030 | Uninduced | 8.718 |
| SRR8749031 | Uninduced | 9.236 |
| SRR8749032 | Uninduced | 7.962 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 19.699 |
| SRR8400027 | Control-Root | 18.067 |