Gene detail information of Glyur000078s00005449.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G39100.13.00E-94PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein
NRXP_003527148.17.40E-157PREDICTED: BAH and coiled-coil domain-containing protein 1-like isoform X1 [Glycine max]
Swissprottr|Q710E8|ORC1A_ARATH1.00E-09Origin of replication complex subunit 1A {ECO:0000303|PubMed:16179646}
trEMBLtr|I1K738|I1K738_SOYBN3.00E-157Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G01180.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00078380143384125+


Gene family

Gene familysubfamily
Transcription Factors FamilyPHD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0003682  chromatin binding

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000078s00005449.1PF01426.13BAH221362.30E-26
Glyur000078s00005449.1PF00628.24PHD1411891.40E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control33.497
SRR1783600control33.819
SRR1783602moderate drought stress42.125
SRR1811619moderate drought stress42.427

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain53.460
DRR006520Root Summer glycyrrhizin high producing strain52.314
DRR006521Root Winter glycyrrhizin high producing strain51.879
DRR006522Root Winter glycyrrhizin high producing strain50.979
DRR006523Root Summer glycyrrhizin low producing strain54.424
DRR006524Root Summer glycyrrhizin low producing strain54.134
DRR006525Leaf Summer glycyrrhizin high producing strain25.174
DRR006526Leaf Summer glycyrrhizin high producing strain25.106

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)35.331
SRR2868004Drought Stress(Tissue:root)43.008
SRR2967015Control (Tissue:root)42.197

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave33.336
SRR9715740Leave39.877
SRR9715741Leave43.695
SRR9715739Root30.068
SRR9715742Root30.445
SRR9715743Root28.373

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h58.625
SRR8749028MeJA induced 9h41.190
SRR8749029MeJA induced 9h57.012
SRR8749030Uninduced36.660
SRR8749031Uninduced50.029
SRR8749032Uninduced51.803

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root59.668
SRR8400027Control-Root52.057

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved