Gene detail information of Glyur000079s00008898.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G36800.2 | 4.00E-59 | RUB1 conjugating enzyme 1 |
| NR | NP_001242389.1 | 5.53E-77 | uncharacterized protein LOC100813186 [Glycine max] |
| COG | YP_008797956.1 | 2.00E-13 | ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum] |
| Swissprot | tr|Q9SDY5|RCE1_ARATH | 3.00E-74 | NEDD8-conjugating enzyme Ubc12 |
| trEMBL | tr|C6SV99|C6SV99_SOYBN | 2.00E-77 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G38470.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00079 | 6 | 804 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | UBC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000079s00008898.1 | PF00179.21 | UQ_con | 4 | 101 | 2.30E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 155.570 |
| SRR1783600 | control | 158.959 |
| SRR1783602 | moderate drought stress | 127.119 |
| SRR1811619 | moderate drought stress | 124.794 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 160.969 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 156.721 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 172.293 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 163.078 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 176.090 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 175.654 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 87.400 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 86.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 192.475 |
| SRR2868004 | Drought Stress(Tissue:root) | 195.566 |
| SRR2967015 | Control (Tissue:root) | 156.150 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 101.785 |
| SRR9715740 | Leave | 115.320 |
| SRR9715741 | Leave | 114.654 |
| SRR9715739 | Root | 37.115 |
| SRR9715742 | Root | 53.625 |
| SRR9715743 | Root | 53.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 166.678 |
| SRR8749028 | MeJA induced 9h | 98.446 |
| SRR8749029 | MeJA induced 9h | 150.828 |
| SRR8749030 | Uninduced | 133.635 |
| SRR8749031 | Uninduced | 99.530 |
| SRR8749032 | Uninduced | 127.471 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 151.472 |
| SRR8400027 | Control-Root | 163.594 |