Gene detail information of Glyur000079s00008916.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G36710.1 | 7.00E-119 | GRAS family transcription factor |
| NR | XP_007156910.1 | 0 | hypothetical protein PHAVU_002G027500g [Phaseolus vulgaris] |
| Swissprot | tr|O23210|SCL15_ARATH | 2.00E-157 | Scarecrow-like protein 15 |
| trEMBL | tr|V7CFI5|V7CFI5_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW28904.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00079 | 106495 | 108084 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000079s00008916.1 | PF03514.9 | GRAS | 162 | 528 | 2.50E-78 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.456 |
| SRR1783600 | control | 8.295 |
| SRR1783602 | moderate drought stress | 7.005 |
| SRR1811619 | moderate drought stress | 7.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.491 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.004 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.789 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.877 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.254 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.709 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.383 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.242 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 12.883 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.145 |
| SRR2967015 | Control (Tissue:root) | 11.902 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 14.396 |
| SRR9715740 | Leave | 15.063 |
| SRR9715741 | Leave | 16.456 |
| SRR9715739 | Root | 2.690 |
| SRR9715742 | Root | 7.757 |
| SRR9715743 | Root | 8.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.664 |
| SRR8749028 | MeJA induced 9h | 5.219 |
| SRR8749029 | MeJA induced 9h | 4.401 |
| SRR8749030 | Uninduced | 1.818 |
| SRR8749031 | Uninduced | 1.294 |
| SRR8749032 | Uninduced | 2.586 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.983 |
| SRR8400027 | Control-Root | 2.784 |