Gene detail information of Glyur000079s00008921.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G66730.1 | 8.00E-94 | C2H2-like zinc finger protein |
| NR | XP_007156918.1 | 0 | hypothetical protein PHAVU_002G028100g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LVQ7|IDD1_ARATH | 0 | Protein indeterminate-domain 1 {ECO:0000303|PubMed:16784536} |
| trEMBL | tr|V7CFE7|V7CFE7_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW28912.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00079 | 124702 | 128789 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
| EAR motif-containing Proteins | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.501 |
| SRR1783600 | control | 10.592 |
| SRR1783602 | moderate drought stress | 20.149 |
| SRR1811619 | moderate drought stress | 19.949 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.163 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.124 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.063 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.683 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.275 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 28.542 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.810 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.779 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 24.777 |
| SRR2868004 | Drought Stress(Tissue:root) | 34.231 |
| SRR2967015 | Control (Tissue:root) | 42.351 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 21.318 |
| SRR9715740 | Leave | 19.328 |
| SRR9715741 | Leave | 22.317 |
| SRR9715739 | Root | 14.115 |
| SRR9715742 | Root | 35.408 |
| SRR9715743 | Root | 30.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 57.147 |
| SRR8749028 | MeJA induced 9h | 100.445 |
| SRR8749029 | MeJA induced 9h | 79.572 |
| SRR8749030 | Uninduced | 37.794 |
| SRR8749031 | Uninduced | 29.760 |
| SRR8749032 | Uninduced | 44.636 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 24.416 |
| SRR8400027 | Control-Root | 22.316 |