Gene detail information of Glyur000079s00008937.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G66750.1 | 0 | chromatin remodeling 1 |
| NR | XP_006573583.1 | 0 | PREDICTED: ATP-dependent DNA helicase DDM1-like [Glycine max] |
| COG | YP_004462436.1 | 6.00E-81 | SNF2-like protein [Mahella australiensis 50-1 BON] |
| Swissprot | tr|Q9XFH4|DDM1_ARATH | 0 | ATP-dependent DNA helicase DDM1 |
| trEMBL | tr|I1J8V7|I1J8V7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G38150.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00079 | 233844 | 239348 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SNF2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000079s00008937.1 | PF00176.18 | SNF2_N | 195 | 492 | 3.50E-72 |
| Glyur000079s00008937.1 | PF00271.26 | Helicase_C | 550 | 628 | 2.20E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.519 |
| SRR1783600 | control | 6.645 |
| SRR1783602 | moderate drought stress | 1.938 |
| SRR1811619 | moderate drought stress | 1.928 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.966 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.906 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.314 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.316 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.556 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.496 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.686 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 21.315 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.086 |
| SRR2967015 | Control (Tissue:root) | 9.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.459 |
| SRR9715740 | Leave | 0.307 |
| SRR9715741 | Leave | 0.598 |
| SRR9715739 | Root | 0.630 |
| SRR9715742 | Root | 1.544 |
| SRR9715743 | Root | 2.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 22.411 |
| SRR8749028 | MeJA induced 9h | 15.272 |
| SRR8749029 | MeJA induced 9h | 10.519 |
| SRR8749030 | Uninduced | 1.107 |
| SRR8749031 | Uninduced | 0.333 |
| SRR8749032 | Uninduced | 0.681 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.099 |
| SRR8400027 | Control-Root | 14.911 |