Gene detail information of Glyur000079s00008939.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G66760.10succinate dehydrogenase 1-1
NRKHN41982.10Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Glycine soja]
COGYP_001526661.10succinate dehydrogenase flavoprotein subunit [Azorhizobium caulinodans ORS 571]
Swissprottr|O82663|SDHA1_ARATH0Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial (Precursor)
trEMBLtr|I1LHR7|I1LHR7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G07250.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00079262318268296+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00234SDHA, SDH1 EC:1.3.5.1 Carbon metabolism map01200
Citrate cycle (TCA cycle)map00020
Oxidative phosphorylationmap00190
Alzheimer's diseasemap05010
Parkinson's diseasemap05012
Huntington's diseasemap05016
Non-alcoholic fatty liver disease (NAFLD)map04932


Gene Ontology

biological_process

GO:0006099  tricarboxylic acid cycle

GO:0022900  electron transport chain

GO:0055114  oxidation-reduction process


molecular_function

GO:0016491  oxidoreductase activity

GO:0016627  oxidoreductase activity, acting on the CH-CH group of donors

GO:0050660  flavin adenine dinucleotide binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000079s00008939.1PF00890.19FAD_binding_2474437.20E-124
Glyur000079s00008939.1PF02910.15Succ_DH_flav_C4846162.60E-47


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control60.503
SRR1783600control60.660
SRR1783602moderate drought stress41.182
SRR1811619moderate drought stress41.215

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain70.959
DRR006520Root Summer glycyrrhizin high producing strain69.651
DRR006521Root Winter glycyrrhizin high producing strain84.758
DRR006522Root Winter glycyrrhizin high producing strain81.675
DRR006523Root Summer glycyrrhizin low producing strain53.733
DRR006524Root Summer glycyrrhizin low producing strain52.597
DRR006525Leaf Summer glycyrrhizin high producing strain79.294
DRR006526Leaf Summer glycyrrhizin high producing strain79.346

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)195.618
SRR2868004Drought Stress(Tissue:root)166.793
SRR2967015Control (Tissue:root)145.073

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave131.030
SRR9715740Leave124.572
SRR9715741Leave127.206
SRR9715739Root40.311
SRR9715742Root94.347
SRR9715743Root84.822

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h74.628
SRR8749028MeJA induced 9h80.572
SRR8749029MeJA induced 9h71.196
SRR8749030Uninduced63.321
SRR8749031Uninduced52.363
SRR8749032Uninduced54.515

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root123.395
SRR8400027Control-Root122.608

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved