Gene detail information of Glyur000079s00008949.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G50870.17.00E-47GATA type zinc finger transcription factor family protein
NRXP_004512046.12.07E-123PREDICTED: GATA transcription factor 18-like [Cicer arietinum]
Swissprottr|Q8LC79|GAT18_ARATH2.00E-62GATA transcription factor 18
trEMBLtr|V7CJ48|V7CJ48_PHAVU1.00E-113Uncharacterized protein {ECO:0000313|EMBL:ESW28941.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00079326684328103+


Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-GATA


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0008270  zinc ion binding

GO:0043565  sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000079s00008949.1PF00320.22GATA1331677.60E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.629
SRR1783600control0.663
SRR1783602moderate drought stress0.867
SRR1811619moderate drought stress0.876

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.773
DRR006520Root Summer glycyrrhizin high producing strain0.766
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.263
DRR006524Root Summer glycyrrhizin low producing strain0.262
DRR006525Leaf Summer glycyrrhizin high producing strain0.221
DRR006526Leaf Summer glycyrrhizin high producing strain0.219

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.147
SRR2868004Drought Stress(Tissue:root)1.664
SRR2967015Control (Tissue:root)2.146

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.079
SRR9715740Leave0.000
SRR9715741Leave0.076
SRR9715739Root0.059
SRR9715742Root0.073
SRR9715743Root0.215

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.042
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.000
SRR8749031Uninduced0.000
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.419
SRR8400027Control-Root0.570