Gene detail information of Glyur000079s00008949.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT3G50870.1 | 7.00E-47 | GATA type zinc finger transcription factor family protein |
NR | XP_004512046.1 | 2.07E-123 | PREDICTED: GATA transcription factor 18-like [Cicer arietinum] |
Swissprot | tr|Q8LC79|GAT18_ARATH | 2.00E-62 | GATA transcription factor 18 |
trEMBL | tr|V7CJ48|V7CJ48_PHAVU | 1.00E-113 | Uncharacterized protein {ECO:0000313|EMBL:ESW28941.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00079 | 326684 | 328103 | + |
Gene family
Gene family | subfamily |
---|---|
Transcription Factors Family | C2C2-GATA |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
-- | -- | -- | -- | -- |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000079s00008949.1 | PF00320.22 | GATA | 133 | 167 | 7.60E-18 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 0.629 |
SRR1783600 | control | 0.663 |
SRR1783602 | moderate drought stress | 0.867 |
SRR1811619 | moderate drought stress | 0.876 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 0.773 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 0.766 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 0.263 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 0.262 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.221 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.219 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 3.147 |
SRR2868004 | Drought Stress(Tissue:root) | 1.664 |
SRR2967015 | Control (Tissue:root) | 2.146 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 0.079 |
SRR9715740 | Leave | 0.000 |
SRR9715741 | Leave | 0.076 |
SRR9715739 | Root | 0.059 |
SRR9715742 | Root | 0.073 |
SRR9715743 | Root | 0.215 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 0.042 |
SRR8749028 | MeJA induced 9h | 0.000 |
SRR8749029 | MeJA induced 9h | 0.000 |
SRR8749030 | Uninduced | 0.000 |
SRR8749031 | Uninduced | 0.000 |
SRR8749032 | Uninduced | 0.000 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 0.419 |
SRR8400027 | Control-Root | 0.570 |