Gene detail information of Glyur000079s00008955.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G19480.25.00E-74DNA glycosylase superfamily protein
NRXP_004512049.13.09E-126PREDICTED: putative DNA-3-methyladenine glycosylase YfjP-like [Cicer arietinum]
COGYP_003267890.12.00E-48DNA-3-methyladenine glycosylase II [Haliangium ochraceum DSM 14365]
trEMBLtr|G7KDL7|G7KDL7_MEDTR3.00E-119HhH-GPD base excision DNA repair family protein {ECO:0000313|EMBL:AES94968.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00079351614352456+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01247alkA EC:3.2.2.21 Base excision repair map03410


Gene Ontology

biological_process

GO:0006281  DNA repair

GO:0006284  base-excision repair


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000079s00008955.1PF00730.20HhH-GPD1122561.10E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.061
SRR1783600control11.505
SRR1783602moderate drought stress13.740
SRR1811619moderate drought stress13.632

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.200
DRR006520Root Summer glycyrrhizin high producing strain6.494
DRR006521Root Winter glycyrrhizin high producing strain6.517
DRR006522Root Winter glycyrrhizin high producing strain6.760
DRR006523Root Summer glycyrrhizin low producing strain18.445
DRR006524Root Summer glycyrrhizin low producing strain17.234
DRR006525Leaf Summer glycyrrhizin high producing strain1.983
DRR006526Leaf Summer glycyrrhizin high producing strain1.970

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)28.048
SRR2868004Drought Stress(Tissue:root)32.317
SRR2967015Control (Tissue:root)35.238

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.000
SRR9715740Leave0.000
SRR9715741Leave0.200
SRR9715739Root0.000
SRR9715742Root1.841
SRR9715743Root1.797

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.550
SRR8749028MeJA induced 9h12.135
SRR8749029MeJA induced 9h8.664
SRR8749030Uninduced8.517
SRR8749031Uninduced10.129
SRR8749032Uninduced12.160

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.264
SRR8400027Control-Root2.071

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved