Gene detail information of Glyur000080s00008683.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G29830.19.00E-147Transducin/WD40 repeat-like superfamily protein
NRXP_003551163.10PREDICTED: WD repeat-containing protein 61-like isoform 1 [Glycine max]
COGYP_003887875.12.00E-45WD40 repeat-containing protein [Cyanothece sp. PCC 7822]
Swissprottr|Q3Y8L7|DAW1_CHLRE9.00E-28Dynein assembly factor with WDR repeat domains 1
trEMBLtr|I1MSD9|I1MSD9_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G05990.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00080182253186176-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000080s00008683.1PF00400.27WD407453.70E-08
Glyur000080s00008683.1PF00400.27WD4054880.0025
Glyur000080s00008683.1PF00400.27WD40941310.054
Glyur000080s00008683.1PF00400.27WD401561841.70E-07
Glyur000080s00008683.1PF00400.27WD401912295.80E-06
Glyur000080s00008683.1PF00400.27WD402362718.60E-11
Glyur000080s00008683.1PF00400.27WD402773199.90E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control81.649
SRR1783600control81.866
SRR1783602moderate drought stress95.498
SRR1811619moderate drought stress95.513

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain73.280
DRR006520Root Summer glycyrrhizin high producing strain72.322
DRR006521Root Winter glycyrrhizin high producing strain53.158
DRR006522Root Winter glycyrrhizin high producing strain51.753
DRR006523Root Summer glycyrrhizin low producing strain64.934
DRR006524Root Summer glycyrrhizin low producing strain64.500
DRR006525Leaf Summer glycyrrhizin high producing strain33.542
DRR006526Leaf Summer glycyrrhizin high producing strain33.841

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)82.054
SRR2868004Drought Stress(Tissue:root)82.889
SRR2967015Control (Tissue:root)84.404

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave42.898
SRR9715740Leave40.196
SRR9715741Leave44.049
SRR9715739Root163.348
SRR9715742Root84.469
SRR9715743Root93.205

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h39.798
SRR8749028MeJA induced 9h30.005
SRR8749029MeJA induced 9h32.218
SRR8749030Uninduced14.253
SRR8749031Uninduced4.292
SRR8749032Uninduced10.230

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root89.156
SRR8400027Control-Root84.460

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved