Gene detail information of Glyur000080s00008694.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G57035.10U-box domain-containing protein kinase family protein
NRKEH32487.10U-box kinase family protein [Medicago truncatula]
COGYP_829095.17.00E-24serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076]
Swissprottr|Q8S8S7|PUB34_ARATH0Serine/threonine-protein kinase
trEMBLtr|A0A072US52|A0A072US52_MEDTR0U-box kinase family protein {ECO:0000313|EMBL:KEH32487.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00080234870239909-


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:1.14.2
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006468  protein phosphorylation

GO:0006950  response to stress

GO:0016567  protein ubiquitination


molecular_function

GO:0004672  protein kinase activity

GO:0004842  ubiquitin-protein transferase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000080s00008694.1PF00582.21Usp221620.00019
Glyur000080s00008694.1PF00069.20Pkinase4106601.00E-41
Glyur000080s00008694.1PF04564.10U-box6917584.00E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.352
SRR1783600control14.384
SRR1783602moderate drought stress15.565
SRR1811619moderate drought stress15.385

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.643
DRR006520Root Summer glycyrrhizin high producing strain15.234
DRR006521Root Winter glycyrrhizin high producing strain15.311
DRR006522Root Winter glycyrrhizin high producing strain15.020
DRR006523Root Summer glycyrrhizin low producing strain22.774
DRR006524Root Summer glycyrrhizin low producing strain22.642
DRR006525Leaf Summer glycyrrhizin high producing strain12.735
DRR006526Leaf Summer glycyrrhizin high producing strain12.639

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.750
SRR2868004Drought Stress(Tissue:root)30.726
SRR2967015Control (Tissue:root)32.423

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.916
SRR9715740Leave8.581
SRR9715741Leave8.619
SRR9715739Root0.906
SRR9715742Root4.747
SRR9715743Root4.334

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.367
SRR8749028MeJA induced 9h18.523
SRR8749029MeJA induced 9h10.547
SRR8749030Uninduced21.546
SRR8749031Uninduced16.919
SRR8749032Uninduced9.768

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.081
SRR8400027Control-Root15.552

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved