Gene detail information of Glyur000080s00008698.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G19430.1 | 3.00E-126 | DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 |
| NR | AFK40275.1 | 0 | unknown [Medicago truncatula] |
| COG | YP_007146025.1 | 1.00E-13 | WD40 repeat-containing protein [Cylindrospermum stagnale PCC 7417] |
| Swissprot | tr|Q8L4M1|THOC6_ARATH | 3.00E-163 | THO complex subunit 6 |
| trEMBL | tr|I3SJ33|I3SJ33_MEDTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK40275.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00080 | 258597 | 263761 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000080s00008698.1 | PF00400.27 | WD40 | 83 | 120 | 0.0036 |
| Glyur000080s00008698.1 | PF00400.27 | WD40 | 192 | 230 | 3.80E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.472 |
| SRR1783600 | control | 17.117 |
| SRR1783602 | moderate drought stress | 30.671 |
| SRR1811619 | moderate drought stress | 30.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.184 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.877 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 34.335 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 33.397 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.683 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.776 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.386 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 30.498 |
| SRR2868004 | Drought Stress(Tissue:root) | 30.257 |
| SRR2967015 | Control (Tissue:root) | 32.808 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.340 |
| SRR9715740 | Leave | 9.256 |
| SRR9715741 | Leave | 10.615 |
| SRR9715739 | Root | 9.941 |
| SRR9715742 | Root | 10.492 |
| SRR9715743 | Root | 11.149 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.507 |
| SRR8749028 | MeJA induced 9h | 26.410 |
| SRR8749029 | MeJA induced 9h | 27.892 |
| SRR8749030 | Uninduced | 28.949 |
| SRR8749031 | Uninduced | 18.386 |
| SRR8749032 | Uninduced | 25.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.520 |
| SRR8400027 | Control-Root | 21.299 |