Gene detail information of Glyur000081s00006756.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G53340.19.00E-52nuclear factor Y, subunit B10
NRXP_007162719.18.26E-108hypothetical protein PHAVU_001G174600g [Phaseolus vulgaris]
Swissprottr|Q8VYK4|NFYB8_ARATH4.00E-78Nuclear transcription factor Y subunit B-8
trEMBLtr|V7CZA7|V7CZA7_PHAVU3.00E-108Uncharacterized protein {ECO:0000313|EMBL:ESW34713.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000819559399001+


Gene family

Gene familysubfamily
Transcription Factors FamilyNF-YB


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005622  intracellular

GO:0005634  nucleus


molecular_function

GO:0043565  sequence-specific DNA binding

GO:0046982  protein heterodimerization activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000081s00006756.1PF00808.18CBFD_NFYB_HMF30943.10E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.873
SRR1783600control13.968
SRR1783602moderate drought stress17.287
SRR1811619moderate drought stress16.053

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain41.839
DRR006520Root Summer glycyrrhizin high producing strain41.929
DRR006521Root Winter glycyrrhizin high producing strain118.868
DRR006522Root Winter glycyrrhizin high producing strain113.891
DRR006523Root Summer glycyrrhizin low producing strain54.701
DRR006524Root Summer glycyrrhizin low producing strain54.749
DRR006525Leaf Summer glycyrrhizin high producing strain9.685
DRR006526Leaf Summer glycyrrhizin high producing strain11.099

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)46.639
SRR2868004Drought Stress(Tissue:root)43.137
SRR2967015Control (Tissue:root)47.209

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave18.209
SRR9715740Leave12.799
SRR9715741Leave11.850
SRR9715739Root37.452
SRR9715742Root13.672
SRR9715743Root19.014

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h29.207
SRR8749028MeJA induced 9h27.250
SRR8749029MeJA induced 9h25.107
SRR8749030Uninduced25.100
SRR8749031Uninduced23.607
SRR8749032Uninduced26.097

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root49.524
SRR8400027Control-Root40.611

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved