Gene detail information of Glyur000081s00006757.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G02880.1 | 7.00E-144 | ubiquitin-protein ligase 4 |
| NR | XP_007144528.1 | 0 | hypothetical protein PHAVU_007G163400g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LYZ7|UPL4_ARATH | 1.00E-154 | E3 ubiquitin-protein ligase UPL4 |
| trEMBL | tr|V7BFA6|V7BFA6_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW16522.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00081 | 106506 | 113677 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | HECT |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10590 | TRIP12 | EC:2.3.2.26 | Ubiquitin mediated proteolysis | map04120 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000081s00006757.1 | PF00632.20 | HECT | 1055 | 1364 | 6.00E-59 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.036 |
| SRR1783600 | control | 0.044 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.045 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.052 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.488 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.344 |
| SRR2967015 | Control (Tissue:root) | 0.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.001 |
| SRR9715741 | Leave | 0.010 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.066 |
| SRR9715743 | Root | 0.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.066 |
| SRR8749028 | MeJA induced 9h | 0.016 |
| SRR8749029 | MeJA induced 9h | 0.043 |
| SRR8749030 | Uninduced | 0.027 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.088 |
| SRR8400027 | Control-Root | 0.064 |