Gene detail information of Glyur000081s00006768.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G37090.1 | 2.00E-120 | Nucleotide-diphospho-sugar transferases superfamily protein |
| NR | XP_003553541.1 | 0 | PREDICTED: probable beta-1,4-xylosyltransferase IRX9-like [Glycine max] |
| Swissprot | tr|Q9ZQC6|IRX9_ARATH | 3.00E-149 | Probable beta-1,4-xylosyltransferase IRX9 |
| trEMBL | tr|I1NA65|I1NA65_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G36280.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00081 | 154549 | 156961 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT43 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000081s00006768.1 | PF03360.11 | Glyco_transf_43 | 132 | 336 | 2.90E-51 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.074 |
| SRR1783600 | control | 5.940 |
| SRR1783602 | moderate drought stress | 3.052 |
| SRR1811619 | moderate drought stress | 2.891 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.785 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.910 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.432 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.427 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.056 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.813 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.022 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.840 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 21.638 |
| SRR2868004 | Drought Stress(Tissue:root) | 15.504 |
| SRR2967015 | Control (Tissue:root) | 15.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.804 |
| SRR9715740 | Leave | 2.913 |
| SRR9715741 | Leave | 1.570 |
| SRR9715739 | Root | 2.568 |
| SRR9715742 | Root | 9.326 |
| SRR9715743 | Root | 7.061 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.030 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 19.616 |
| SRR8400027 | Control-Root | 29.808 |