Gene detail information of Glyur000081s00006774.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_004143239.1 | 4.01E-28 | PREDICTED: DNA-binding protein S1FA1-like [Cucumis sativus] |
| Swissprot | tr|P42553|S1FA1_ORYSJ | 3.00E-14 | DNA-binding protein S1FA1 |
| trEMBL | tr|A0A0A0KEM3|A0A0A0KEM3_CUCSA | 1.00E-28 | DNA-binding protein S1FA {ECO:0000313|EMBL:KGN48135.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00081 | 187380 | 189477 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | S1Fa-like |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000081s00006774.1 | PF04689.8 | S1FA | 22 | 88 | 2.80E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 208.071 |
| SRR1783600 | control | 209.148 |
| SRR1783602 | moderate drought stress | 98.817 |
| SRR1811619 | moderate drought stress | 97.782 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 145.609 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 144.198 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 222.911 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 216.981 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 112.892 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 113.598 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 65.397 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 64.769 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 123.263 |
| SRR2868004 | Drought Stress(Tissue:root) | 101.016 |
| SRR2967015 | Control (Tissue:root) | 87.459 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 89.437 |
| SRR9715740 | Leave | 107.937 |
| SRR9715741 | Leave | 95.946 |
| SRR9715739 | Root | 57.292 |
| SRR9715742 | Root | 57.331 |
| SRR9715743 | Root | 54.773 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 125.894 |
| SRR8749028 | MeJA induced 9h | 75.731 |
| SRR8749029 | MeJA induced 9h | 118.745 |
| SRR8749030 | Uninduced | 88.216 |
| SRR8749031 | Uninduced | 59.044 |
| SRR8749032 | Uninduced | 97.307 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 139.426 |
| SRR8400027 | Control-Root | 145.464 |