Gene detail information of Glyur000081s00006776.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G37150.3 | 2.00E-95 | RING/U-box superfamily protein |
| NR | XP_003554369.1 | 0 | PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Glycine max] |
| Swissprot | tr|O49500|MBR2_ARATH | 3.00E-35 | E3 ubiquitin-protein ligase MBR2 |
| trEMBL | tr|I1NA76|I1NA76_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G36400.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00081 | 198422 | 206211 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000081s00006776.1 | PF13639.1 | zf-RING_2 | 631 | 674 | 2.20E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 45.921 |
| SRR1783600 | control | 44.028 |
| SRR1783602 | moderate drought stress | 40.998 |
| SRR1811619 | moderate drought stress | 41.743 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 54.430 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 49.749 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 96.643 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 99.285 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 58.815 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 55.134 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.443 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 29.279 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 64.875 |
| SRR2868004 | Drought Stress(Tissue:root) | 84.929 |
| SRR2967015 | Control (Tissue:root) | 73.123 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 31.102 |
| SRR9715740 | Leave | 33.499 |
| SRR9715741 | Leave | 38.125 |
| SRR9715739 | Root | 17.604 |
| SRR9715742 | Root | 38.604 |
| SRR9715743 | Root | 33.150 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 38.280 |
| SRR8749028 | MeJA induced 9h | 64.302 |
| SRR8749029 | MeJA induced 9h | 37.653 |
| SRR8749030 | Uninduced | 63.108 |
| SRR8749031 | Uninduced | 71.665 |
| SRR8749032 | Uninduced | 50.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 59.133 |
| SRR8400027 | Control-Root | 53.262 |