Gene detail information of Glyur000081s00006787.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G37160.10Transducin/WD40 repeat-like superfamily protein
NRXP_007162742.10hypothetical protein PHAVU_001G176500g [Phaseolus vulgaris]
COGYP_005072476.18.00E-10serine/threonine protein kinase with WD-40 repeats [Arthrospira platensis NIES-39]
Swissprottr|Q8H0T9|KTNB1_ARATH1.00E-06Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255|HAMAP-Rule:MF_03022}
trEMBLtr|V7D0Q6|V7D0Q6_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW34736.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00081252079256998+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000081s00006787.1PF00400.27WD403063341.50E-05
Glyur000081s00006787.1PF00400.27WD403513762.90E-05
Glyur000081s00006787.1PF00400.27WD403824310.12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.183
SRR1783600control17.091
SRR1783602moderate drought stress19.735
SRR1811619moderate drought stress20.095

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain29.146
DRR006520Root Summer glycyrrhizin high producing strain29.409
DRR006521Root Winter glycyrrhizin high producing strain30.585
DRR006522Root Winter glycyrrhizin high producing strain30.146
DRR006523Root Summer glycyrrhizin low producing strain27.398
DRR006524Root Summer glycyrrhizin low producing strain27.361
DRR006525Leaf Summer glycyrrhizin high producing strain13.500
DRR006526Leaf Summer glycyrrhizin high producing strain13.344

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)47.407
SRR2868004Drought Stress(Tissue:root)54.110
SRR2967015Control (Tissue:root)49.390

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave27.653
SRR9715740Leave28.058
SRR9715741Leave34.395
SRR9715739Root16.065
SRR9715742Root31.283
SRR9715743Root26.923

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.483
SRR8749028MeJA induced 9h33.293
SRR8749029MeJA induced 9h21.015
SRR8749030Uninduced22.098
SRR8749031Uninduced21.794
SRR8749032Uninduced20.563

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root43.962
SRR8400027Control-Root42.109

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved