Gene detail information of Glyur000081s00006789.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G09770.18.00E-95RING/U-box superfamily protein
NRXP_004493969.10PREDICTED: probable E3 ubiquitin-protein ligase LOG2-like [Cicer arietinum]
Swissprottr|Q9S752|LOFG2_ARATH4.00E-115Probable E3 ubiquitin-protein ligase LOG2
trEMBLtr|Q2HV40|Q2HV40_MEDTR0Zinc finger, RING-type {ECO:0000313|EMBL:ABD32811.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00081263375267521-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000081s00006789.1PF13920.1zf-C3HC4_32893358.10E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control32.495
SRR1783600control32.483
SRR1783602moderate drought stress25.609
SRR1811619moderate drought stress25.280

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain37.700
DRR006520Root Summer glycyrrhizin high producing strain37.570
DRR006521Root Winter glycyrrhizin high producing strain45.002
DRR006522Root Winter glycyrrhizin high producing strain43.887
DRR006523Root Summer glycyrrhizin low producing strain83.643
DRR006524Root Summer glycyrrhizin low producing strain84.351
DRR006525Leaf Summer glycyrrhizin high producing strain14.502
DRR006526Leaf Summer glycyrrhizin high producing strain14.502

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)44.958
SRR2868004Drought Stress(Tissue:root)49.584
SRR2967015Control (Tissue:root)47.818

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.201
SRR9715740Leave17.318
SRR9715741Leave23.691
SRR9715739Root42.715
SRR9715742Root66.732
SRR9715743Root62.858

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h18.627
SRR8749028MeJA induced 9h21.574
SRR8749029MeJA induced 9h38.429
SRR8749030Uninduced38.702
SRR8749031Uninduced43.888
SRR8749032Uninduced34.504

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root29.408
SRR8400027Control-Root33.006

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved