Gene detail information of Glyur000081s00006796.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G30080.10auxin response factor 16
NRXP_007027336.10Auxin response factor 19 [Theobroma cacao]
Swissprottr|Q653H7|ARFR_ORYSJ0Auxin response factor 18
trEMBLtr|A0A061ET58|A0A061ET58_THECC0Auxin response factor {ECO:0000256|RuleBase:RU004561}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00081325267329617-


Gene family

Gene familysubfamily
Transcription Factors FamilyARF


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated

GO:0009725  response to hormone


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0046983  protein dimerization activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000081s00006796.1PF02362.16B31392401.30E-20
Glyur000081s00006796.1PF06507.8Auxin_resp3083901.50E-31
Glyur000081s00006796.1PF02309.11AUX_IAA5587041.60E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.142
SRR1783600control7.231
SRR1783602moderate drought stress5.233
SRR1811619moderate drought stress5.194

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.561
DRR006520Root Summer glycyrrhizin high producing strain5.489
DRR006521Root Winter glycyrrhizin high producing strain2.234
DRR006522Root Winter glycyrrhizin high producing strain2.103
DRR006523Root Summer glycyrrhizin low producing strain17.618
DRR006524Root Summer glycyrrhizin low producing strain17.787
DRR006525Leaf Summer glycyrrhizin high producing strain2.151
DRR006526Leaf Summer glycyrrhizin high producing strain2.213

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)6.319
SRR2868004Drought Stress(Tissue:root)7.840
SRR2967015Control (Tissue:root)5.904

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.568
SRR9715740Leave4.323
SRR9715741Leave3.453
SRR9715739Root5.687
SRR9715742Root10.919
SRR9715743Root10.437

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.767
SRR8749028MeJA induced 9h0.307
SRR8749029MeJA induced 9h0.338
SRR8749030Uninduced0.336
SRR8749031Uninduced0.071
SRR8749032Uninduced0.031

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.954
SRR8400027Control-Root15.510

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved