Gene detail information of Glyur000081s00006800.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G14390.10Pyridoxal-dependent decarboxylase family protein
NRKHN09503.10Diaminopimelate decarboxylase 2, chloroplastic [Glycine soja]
COGYP_002728388.16.00E-93diaminopimelate decarboxylase [Sulfurihydrogenibium azorense Az-Fu1]
Swissprottr|Q949X7|DCDA1_ARATH0Diaminopimelate decarboxylase 1, chloroplastic (Precursor)
trEMBLtr|C6TA11|C6TA11_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G33830.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00081341170346072-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01586lysA EC:4.1.1.20 Biosynthesis of amino acids map01230
Lysine biosynthesismap00300


Gene Ontology

biological_process

GO:0009089  lysine biosynthetic process via diaminopimelate


molecular_function

GO:0003824  catalytic activity

GO:0008836  diaminopimelate decarboxylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000081s00006800.2PF02784.11Orn_Arg_deC_N1223524.00E-50
Glyur000081s00006800.2PF00278.17Orn_DAP_Arg_deC3574641.50E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control85.171
SRR1783600control85.532
SRR1783602moderate drought stress64.542
SRR1811619moderate drought stress64.160

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain48.285
DRR006520Root Summer glycyrrhizin high producing strain47.305
DRR006521Root Winter glycyrrhizin high producing strain29.935
DRR006522Root Winter glycyrrhizin high producing strain28.963
DRR006523Root Summer glycyrrhizin low producing strain26.315
DRR006524Root Summer glycyrrhizin low producing strain26.589
DRR006525Leaf Summer glycyrrhizin high producing strain39.339
DRR006526Leaf Summer glycyrrhizin high producing strain39.220

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)108.136
SRR2868004Drought Stress(Tissue:root)70.750
SRR2967015Control (Tissue:root)69.664

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave42.764
SRR9715740Leave43.769
SRR9715741Leave41.936
SRR9715739Root69.072
SRR9715742Root57.656
SRR9715743Root59.649

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h45.144
SRR8749028MeJA induced 9h37.669
SRR8749029MeJA induced 9h32.716
SRR8749030Uninduced17.151
SRR8749031Uninduced5.891
SRR8749032Uninduced10.982

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root68.883
SRR8400027Control-Root71.028

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved