Gene detail information of Glyur000082s00007557.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06600.1 | 4.00E-77 | ubiquitin-specific protease 12 |
| NR | KHN37118.1 | 1.36E-116 | Ubiquitin carboxyl-terminal hydrolase 13 [Glycine soja] |
| Swissprot | tr|Q9FPT1|UBP12_ARATH | 9.00E-87 | Ubiquitin carboxyl-terminal hydrolase 12 |
| trEMBL | tr|I1NE40|I1NE40_SOYBN | 6.00E-119 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G11330.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00082 | 16967 | 23917 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K11838 | USP7, UBP15 | EC:3.4.19.12 | FoxO signaling pathway | map04068 |
| Viral carcinogenesis | map05203 | |||
| Herpes simplex infection | map05168 | |||
| Epstein-Barr virus infection | map05169 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000082s00007557.1 | PF14244.1 | UBN2_3 | 35 | 178 | 1.50E-40 |
| Glyur000082s00007557.1 | PF12436.3 | USP7_ICP0_bdg | 360 | 487 | 5.60E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.532 |
| SRR1783600 | control | 6.580 |
| SRR1783602 | moderate drought stress | 12.359 |
| SRR1811619 | moderate drought stress | 12.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 35.240 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 34.165 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 33.543 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 32.700 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 49.074 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 47.738 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.263 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.996 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.748 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.677 |
| SRR2967015 | Control (Tissue:root) | 9.789 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 19.921 |
| SRR9715740 | Leave | 31.584 |
| SRR9715741 | Leave | 18.336 |
| SRR9715739 | Root | 4.705 |
| SRR9715742 | Root | 10.705 |
| SRR9715743 | Root | 8.320 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.208 |
| SRR8749029 | MeJA induced 9h | 0.025 |
| SRR8749030 | Uninduced | 0.053 |
| SRR8749031 | Uninduced | 0.048 |
| SRR8749032 | Uninduced | 0.280 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 17.985 |
| SRR8400027 | Control-Root | 20.470 |