Gene detail information of Glyur000082s00007560.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G06650.10ATP-citrate lyase B-1
NRABR15094.10ATP citrate lyase alpha subunit [Glycyrrhiza uralensis]
COGYP_004151629.10ATP-citrate lyase/succinyl-CoA ligase [Thermovibrio ammonificans HB-1]
Swissprottr|Q93VT8|ACLB1_ORYSJ0ATP-citrate synthase beta chain protein 1
trEMBLtr|A6MZ92|A6MZ92_GLYUR0ATP citrate lyase alpha subunit {ECO:0000313|EMBL:ABR15094.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000823064937957+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01648ACLY EC:2.3.3.8 Citrate cycle (TCA cycle) map00020
Carbon fixation pathways in prokaryotesmap00720


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0044262  cellular carbohydrate metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0003878  ATP citrate synthase activity

GO:0004775  succinate-CoA ligase (ADP-forming) activity

GO:0046912  transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000082s00007560.1PF00549.14Ligase_CoA1732981.80E-12
Glyur000082s00007560.1PF00285.16Citrate_synt3995983.50E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.137
SRR1783600control16.179
SRR1783602moderate drought stress11.264
SRR1811619moderate drought stress11.155

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.990
DRR006520Root Summer glycyrrhizin high producing strain14.837
DRR006521Root Winter glycyrrhizin high producing strain4.418
DRR006522Root Winter glycyrrhizin high producing strain4.348
DRR006523Root Summer glycyrrhizin low producing strain14.245
DRR006524Root Summer glycyrrhizin low producing strain14.345
DRR006525Leaf Summer glycyrrhizin high producing strain5.638
DRR006526Leaf Summer glycyrrhizin high producing strain5.620

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)24.562
SRR2868004Drought Stress(Tissue:root)18.619
SRR2967015Control (Tissue:root)17.627

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.758
SRR9715740Leave4.511
SRR9715741Leave5.597
SRR9715739Root6.613
SRR9715742Root10.413
SRR9715743Root8.662

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.613
SRR8749028MeJA induced 9h16.514
SRR8749029MeJA induced 9h10.537
SRR8749030Uninduced3.705
SRR8749031Uninduced1.429
SRR8749032Uninduced2.597

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root28.840
SRR8400027Control-Root29.441

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved