Gene detail information of Glyur000082s00007575.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G17000.11.00E-107ubiquitin-conjugating enzyme 32
NRAFK49409.10unknown [Lotus japonicus]
Swissprottr|Q9LSP7|UBC32_ARATH7.00E-133Ubiquitin-conjugating enzyme E2 32
trEMBLtr|I3TA67|I3TA67_LOTJA0Uncharacterized protein {ECO:0000313|EMBL:AFK49409.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00082137066139967-


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10578UBE2J1, NCUBE1, UBC6 EC:2.3.2.23 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
Parkinson's diseasemap05012


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000082s00007575.1PF00179.21UQ_con801914.90E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control118.053
SRR1783600control118.640
SRR1783602moderate drought stress109.869
SRR1811619moderate drought stress109.400

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain96.791
DRR006520Root Summer glycyrrhizin high producing strain95.916
DRR006521Root Winter glycyrrhizin high producing strain132.032
DRR006522Root Winter glycyrrhizin high producing strain128.169
DRR006523Root Summer glycyrrhizin low producing strain104.733
DRR006524Root Summer glycyrrhizin low producing strain106.175
DRR006525Leaf Summer glycyrrhizin high producing strain87.067
DRR006526Leaf Summer glycyrrhizin high producing strain86.745

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)51.412
SRR2868004Drought Stress(Tissue:root)53.314
SRR2967015Control (Tissue:root)62.725

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave51.344
SRR9715740Leave66.811
SRR9715741Leave58.437
SRR9715739Root32.601
SRR9715742Root42.469
SRR9715743Root38.723

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h62.996
SRR8749028MeJA induced 9h79.739
SRR8749029MeJA induced 9h60.943
SRR8749030Uninduced72.225
SRR8749031Uninduced64.862
SRR8749032Uninduced68.791

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root61.202
SRR8400027Control-Root51.929

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved