Gene detail information of Glyur000082s00007588.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G02080.18.00E-103secretion-associated RAS super family 2
NRXP_006419420.11.20E-180hypothetical protein CICLE_v10005438mg [Citrus clementina]
COGYP_001737337.11.00E-18small GTP-binding protein [Candidatus Korarchaeum cryptofilum OPF8]
Swissprottr|O04834|SAR1A_ARATH2.00E-127GTP-binding protein SAR1A
trEMBLtr|V4S1T8|V4S1T8_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR32660.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00082211772217530+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K07953SAR1 EC:3.6.5.- Protein processing in endoplasmic reticulum map04141
Legionellosismap05134


Gene Ontology

biological_process

GO:0006886  intracellular protein transport

GO:0007264  small GTPase mediated signal transduction


cellular_component

GO:0005622  intracellular


molecular_function

GO:0005525  GTP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000082s00007588.1PF00025.16Arf81889.90E-63
Glyur000082s00007588.1PF00025.16Arf2404242.60E-63


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control72.779
SRR1783600control73.096
SRR1783602moderate drought stress51.944
SRR1811619moderate drought stress51.896

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain95.204
DRR006520Root Summer glycyrrhizin high producing strain95.861
DRR006521Root Winter glycyrrhizin high producing strain55.970
DRR006522Root Winter glycyrrhizin high producing strain55.940
DRR006523Root Summer glycyrrhizin low producing strain75.400
DRR006524Root Summer glycyrrhizin low producing strain74.522
DRR006525Leaf Summer glycyrrhizin high producing strain34.115
DRR006526Leaf Summer glycyrrhizin high producing strain34.108

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)119.763
SRR2868004Drought Stress(Tissue:root)92.916
SRR2967015Control (Tissue:root)98.943

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave53.123
SRR9715740Leave49.979
SRR9715741Leave62.132
SRR9715739Root109.361
SRR9715742Root67.104
SRR9715743Root75.775

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h59.528
SRR8749028MeJA induced 9h60.409
SRR8749029MeJA induced 9h65.731
SRR8749030Uninduced94.798
SRR8749031Uninduced80.994
SRR8749032Uninduced88.325

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root126.815
SRR8400027Control-Root111.248

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved