Gene detail information of Glyur000082s00007589.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G16150.10calmodulin binding;transcription regulators
NRXP_006584006.10PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Glycine max]
Swissprottr|O23463|CMTA5_ARATH0Calmodulin-binding transcription activator 5
trEMBLtr|K7L3K8|K7L3K8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G37090.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00082218531228224-


Gene family

Gene familysubfamily
Transcription Factors FamilyCAMTA


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000082s00007589.1PF03859.11CG-1301453.80E-49
Glyur000082s00007589.1PF00612.22IQ7457630.14
Glyur000082s00007589.1PF00612.22IQ7687870.0028


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.558
SRR1783600control16.593
SRR1783602moderate drought stress22.271
SRR1811619moderate drought stress21.849

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain26.631
DRR006520Root Summer glycyrrhizin high producing strain26.709
DRR006521Root Winter glycyrrhizin high producing strain30.576
DRR006522Root Winter glycyrrhizin high producing strain30.113
DRR006523Root Summer glycyrrhizin low producing strain23.470
DRR006524Root Summer glycyrrhizin low producing strain23.835
DRR006525Leaf Summer glycyrrhizin high producing strain8.950
DRR006526Leaf Summer glycyrrhizin high producing strain8.972

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.338
SRR2868004Drought Stress(Tissue:root)26.457
SRR2967015Control (Tissue:root)27.652

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.942
SRR9715740Leave10.878
SRR9715741Leave15.068
SRR9715739Root6.786
SRR9715742Root24.124
SRR9715743Root18.686

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.433
SRR8749028MeJA induced 9h13.317
SRR8749029MeJA induced 9h7.718
SRR8749030Uninduced6.273
SRR8749031Uninduced2.551
SRR8749032Uninduced3.513

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.607
SRR8400027Control-Root26.463

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved