Gene detail information of Glyur000082s00007601.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G06740.12.00E-28GATA transcription factor 15
NRXP_004508168.11.90E-67PREDICTED: GATA transcription factor 15-like [Cicer arietinum]
Swissprottr|Q9FJ10|GAT16_ARATH8.00E-40GATA transcription factor 16
trEMBLtr|I3T122|I3T122_LOTJA7.00E-66Uncharacterized protein {ECO:0000313|EMBL:AFK46214.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00082274566275756+


Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-GATA


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0008270  zinc ion binding

GO:0043565  sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000082s00007601.1PF00320.22GATA60931.60E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.488
SRR1783600control16.586
SRR1783602moderate drought stress17.389
SRR1811619moderate drought stress17.262

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain27.968
DRR006520Root Summer glycyrrhizin high producing strain27.836
DRR006521Root Winter glycyrrhizin high producing strain3.389
DRR006522Root Winter glycyrrhizin high producing strain3.319
DRR006523Root Summer glycyrrhizin low producing strain27.358
DRR006524Root Summer glycyrrhizin low producing strain26.298
DRR006525Leaf Summer glycyrrhizin high producing strain18.933
DRR006526Leaf Summer glycyrrhizin high producing strain19.068

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)39.031
SRR2868004Drought Stress(Tissue:root)33.297
SRR2967015Control (Tissue:root)34.375

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave21.513
SRR9715740Leave18.623
SRR9715741Leave15.857
SRR9715739Root21.635
SRR9715742Root29.819
SRR9715743Root27.165

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h43.040
SRR8749028MeJA induced 9h20.348
SRR8749029MeJA induced 9h16.756
SRR8749030Uninduced11.314
SRR8749031Uninduced3.644
SRR8749032Uninduced4.053

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root35.652
SRR8400027Control-Root38.335

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved