Gene detail information of Glyur000082s00007616.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G19760.10eukaryotic initiation factor 4A-III
NRXP_007138834.10hypothetical protein PHAVU_009G241200g [Phaseolus vulgaris]
COGYP_003640197.12.00E-98DEAD/DEAH box helicase [Thermincola potens JR]
Swissprottr|P41380|IF4A3_NICPL0Eukaryotic initiation factor 4A-3
trEMBLtr|V7B1T6|V7B1T6_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW10828.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00082375077379092-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13025EIF4A3, FAL1 EC:3.6.4.13 Spliceosome map03040
RNA transportmap03013
mRNA surveillance pathwaymap03015


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000082s00007616.1PF00270.24DEAD582201.50E-37
Glyur000082s00007616.1PF00271.26Helicase_C2913731.30E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control42.136
SRR1783600control42.271
SRR1783602moderate drought stress57.682
SRR1811619moderate drought stress57.164

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain93.904
DRR006520Root Summer glycyrrhizin high producing strain93.060
DRR006521Root Winter glycyrrhizin high producing strain78.201
DRR006522Root Winter glycyrrhizin high producing strain75.589
DRR006523Root Summer glycyrrhizin low producing strain107.127
DRR006524Root Summer glycyrrhizin low producing strain106.660
DRR006525Leaf Summer glycyrrhizin high producing strain38.463
DRR006526Leaf Summer glycyrrhizin high producing strain38.345

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)161.436
SRR2868004Drought Stress(Tissue:root)145.534
SRR2967015Control (Tissue:root)161.857

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave81.382
SRR9715740Leave78.509
SRR9715741Leave94.643
SRR9715739Root83.265
SRR9715742Root112.422
SRR9715743Root107.730

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h62.540
SRR8749028MeJA induced 9h69.740
SRR8749029MeJA induced 9h50.497
SRR8749030Uninduced47.680
SRR8749031Uninduced53.585
SRR8749032Uninduced44.822

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root132.880
SRR8400027Control-Root122.145

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved