Gene detail information of Glyur000082s00007617.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06770.2 | 2.00E-133 | Pectin lyase-like superfamily protein |
| NR | KHN03332.1 | 0 | Putative polygalacturonase [Glycine soja] |
| COG | YP_822529.1 | 7.00E-33 | glycoside hydrolase family protein [Candidatus Solibacter usitatus Ellin6076] |
| Swissprot | tr|A7PZL3|PGLR_VITVI | 1.00E-105 | Probable polygalacturonase |
| trEMBL | tr|I1MRM1|I1MRM1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G03300.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00082 | 379881 | 382758 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000082s00007617.1 | PF12708.2 | Pectate_lyase_3 | 41 | 79 | 2.80E-06 |
| Glyur000082s00007617.1 | PF00295.12 | Glyco_hydro_28 | 107 | 390 | 1.10E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.379 |
| SRR1783600 | control | 3.510 |
| SRR1783602 | moderate drought stress | 3.348 |
| SRR1811619 | moderate drought stress | 3.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.825 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.766 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.220 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.340 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.760 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.920 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.148 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.974 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 15.824 |
| SRR2868004 | Drought Stress(Tissue:root) | 15.732 |
| SRR2967015 | Control (Tissue:root) | 11.820 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.282 |
| SRR9715740 | Leave | 3.108 |
| SRR9715741 | Leave | 2.450 |
| SRR9715739 | Root | 1.992 |
| SRR9715742 | Root | 3.083 |
| SRR9715743 | Root | 2.920 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.197 |
| SRR8749028 | MeJA induced 9h | 9.203 |
| SRR8749029 | MeJA induced 9h | 5.385 |
| SRR8749030 | Uninduced | 3.186 |
| SRR8749031 | Uninduced | 2.137 |
| SRR8749032 | Uninduced | 1.476 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.242 |
| SRR8400027 | Control-Root | 11.579 |