Gene detail information of Glyur000083s00006939.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G05670.13.00E-126RING/U-box protein
NRXP_003626181.10PHD and RING finger domain-containing protein [Medicago truncatula]
Swissprottr|Q9SGH2|MBD9_ARATH1.00E-07Methyl-CpG-binding domain-containing protein 9
trEMBLtr|G7KWI7|G7KWI7_MEDTR0Poxvirus Ag35 surface protein {ECO:0000313|EMBL:AES82399.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000832139224874+


Gene family

Gene familysubfamily
Transcription Factors FamilyPHD
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000083s00006939.1PF13639.1zf-RING_23413842.10E-07
Glyur000083s00006939.1PF00628.24PHD4344805.30E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.823
SRR1783600control10.143
SRR1783602moderate drought stress11.910
SRR1811619moderate drought stress11.945

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain27.796
DRR006520Root Summer glycyrrhizin high producing strain27.086
DRR006521Root Winter glycyrrhizin high producing strain39.962
DRR006522Root Winter glycyrrhizin high producing strain38.598
DRR006523Root Summer glycyrrhizin low producing strain42.762
DRR006524Root Summer glycyrrhizin low producing strain42.308
DRR006525Leaf Summer glycyrrhizin high producing strain11.078
DRR006526Leaf Summer glycyrrhizin high producing strain11.279

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.382
SRR2868004Drought Stress(Tissue:root)31.016
SRR2967015Control (Tissue:root)28.262

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave20.478
SRR9715740Leave20.243
SRR9715741Leave29.463
SRR9715739Root3.404
SRR9715742Root24.572
SRR9715743Root22.753

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h52.461
SRR8749028MeJA induced 9h114.017
SRR8749029MeJA induced 9h97.292
SRR8749030Uninduced124.076
SRR8749031Uninduced195.166
SRR8749032Uninduced116.596

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.183
SRR8400027Control-Root22.315

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved