Gene detail information of Glyur000083s00006942.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G06740.16.00E-20GATA transcription factor 15
NRXP_004494549.12.14E-52PREDICTED: GATA transcription factor 16-like [Cicer arietinum]
Swissprottr|Q8LG10|GAT15_ARATH6.00E-31GATA transcription factor 15
trEMBLtr|F6I4R1|F6I4R1_VITVI3.00E-52Putative uncharacterized protein {ECO:0000313|EMBL:CCB61898.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000833905140300-


Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-GATA


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0008270  zinc ion binding

GO:0043565  sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000083s00006942.1PF00320.22GATA20532.30E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.739
SRR1783600control0.775
SRR1783602moderate drought stress0.620
SRR1811619moderate drought stress0.578

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.763
DRR006520Root Summer glycyrrhizin high producing strain0.756
DRR006521Root Winter glycyrrhizin high producing strain0.259
DRR006522Root Winter glycyrrhizin high producing strain0.254
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain5.234
DRR006526Leaf Summer glycyrrhizin high producing strain5.298

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.287
SRR2868004Drought Stress(Tissue:root)7.224
SRR2967015Control (Tissue:root)4.975

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.335
SRR9715740Leave8.979
SRR9715741Leave5.065
SRR9715739Root0.377
SRR9715742Root0.941
SRR9715743Root1.649

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.770
SRR8749028MeJA induced 9h3.263
SRR8749029MeJA induced 9h0.853
SRR8749030Uninduced0.036
SRR8749031Uninduced0.000
SRR8749032Uninduced0.197

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.732
SRR8400027Control-Root2.511

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved