Gene detail

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Gene detail information of Glyur000083s00006965.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G05820.1	invertase H
NR	XP_003520789.1	PREDICTED: alkaline/neutral invertase CINV2-like [Glycine max]
COG	YP_007129106.1	neutral invertase [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q84JL5\|INVH_ARATH	Probable alkaline/neutral invertase A, chloroplastic {ECO:0000305} (Precursor)
trEMBL	tr\|K7KGJ9\|K7KGJ9_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G38970.2}

Sequence

Transcript Sequence

>Glyur000083s00006965.1
TTGAAGATATCAACCACCACTTGCTCATATTTTGTTTCTTGGATTTCTGTTATGACCGCTATCATTAGTTATTGTACCATGAAACCATCCTCTAGGATTCTCATTGGCTGCAAGAATTCATCTTCTCGAATTCTTGCAATGTGTCACCATAGTACTCTTACTAATTCAATGTCTAACTCTAATCCTTTTGGTCTCAATCTTGCTCACAGCACCATGCATTGCCCTTTTGGACGCGTAATGAATGGTACCCAGAAAGTTTTCGGGTTACCCTCTTGGAGTTTCAAAAAGGAAGGTGTCTCTACCATTGCTGGAGTTGCCTTCAAGGCTCGCGACTTCTCAGGCACCGTTGAGACCCATGTTAATGACAACAGTGGGGAGAAAGTTTATGTAAAGGGTGGCAGGAATGTGAAGCCATTACTGGTGGAAAGAATTGATCACAAAGATGATGGAGGAGAGGATGAGTCTCGGTTAGAAGCTGGTGGTGAGGAAGATGTGAACAAGGAGAATTGTTCAGGGGGTTTGAAGAATGTATCTGAGACCAAGAATAGTGGTGGTGATGGTGAGGATGAGACAGAGGTGGAAAAAGAGGCGTGGAGTTTATTGCAGAATGCGCTTGTGACGTATTGTGACACCCCGGTGGGGACGGTGGCAGCAGCAACTGATGGTAACCAGCCANCCCAGAATTATGATCAGGTCTTTATTCGGGACTTCATCCCTTCAGCTCTTGCTTTCTTGCTCAAGGGAGAAACCGAGATTGTCAAGAACTTTCTCCTTCACACCTTGCAACTCCAGAGTTGGGAGAAAACAGTGGACTGCTATAGCCCGGGGCAGGGCTTGATGCCTGCCAGTTTCAAGGTTAGAACAATGGAACTTAATGACAACGAGACAGAAGAAGTTTTAGATCCTGATTTTGGGGAATCAGCTATTGGTCGTGTTGCTCCTGTAGATTCAGGATTGTGGTGGATCATCTTGCTNCGGGCTTATGGGAAGCTCACTGGTGACTATAGCTTGCAAGAAAGGTTGGAAGTTCAAACAGGCTTACATATGATCCTTAACTTGTGTTTAACTGATGGCTTCGATATGTTCCCTTCTCTGTTAGTAACTGATGGATCATGCATGATAGACAGGAGGATGGGTATTCATGGTCACCCTCTTGAGATTCAAGTGAGTGTAACTAGTCTATGTTTACATTCTTTAAGTTTTGCTTTGCAGNCATTATTTTACTCAGCTCTTCGCTCAGCCCGTGAGATGGTCATCGTAAATGATGAATCCAACAATCTGGTTGGAGAAATTAATAACAGACTCAGTGCACTACAATTCCACATTAGAGAGTATTATTGGCTNGATATGAGAAAGATAAATGAGATATACAGGTATAAAACAGAAGAGTACTCCTTGGATGCGACAAACAAGTTCAACATCTATCCAGAACAAATTCCCATGTGGTTAATGGATTGGATTCCAGAGGGAGGTGGGTATCTGATAGGGAATCTACAGCCAGCTCACATGGATTTCAGGTTTTTCATGCTTGGAAATNTTTGGTCTATTATTTCCTCTTTGGGTACCCCAAGACAGAATATGGCTATCTTGAATCTCATAGAAACAAAATGGAATGATCTCGTGGGACACATGCCTCTTAAGATATGTTATCCTGCCTTGGANCAAGAAGATTGGCGCGTAATTACCGGCAGTGACCCTAAGAATACCCCTTGGTCATATCACAATGGTGGATCTTGGCCAACCCTTCTGTGGCAGTTTACGTTGGCATGCATCAAAATGGGGAGAATTGAAATGGCCCAGAAGGCCGTTGCTATGGCTGAGGAGAGACTGCCATTTGATTCTTGGCCTGAATATTATGACACCCGCACAGGAAGATTTATTGGAAANCAAGCCCGTCTTTTTCAAACATGGACAATGGCTGGGTTCCTTGCATCCAAGATGCTCTTGAAGAATCCTGAAAGAGCATCCTTGCTATCCTGGGATGAGGATCTNGAGATTCTGGAGACATGTGTTTGTGTACTTAATAAGAATGGCAGGAAAAAATGCTCGCGTGATGCCGCAAAGTCACAAATTCTAGTGTGATGAGGNTCATCTCTGCTGTACAGTCACAAGTTTAGGGAATGAGTTGAGTTTGATAGGATGCAGTAACACTTACAATGGAAAAACAATATCTTCCACATTGTTGTGGCTATGACTACTAAGGTTTTCATTTTTGGGGAAAATGGGGGTTCTTATT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00083	169541	172654	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH100

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000083s00006965.1	PF12899.2	Glyco_hydro_100	196	652	9.10E-205

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.708
SRR1783600	control	0.725
SRR1783602	moderate drought stress	0.874
SRR1811619	moderate drought stress	0.853

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.388
DRR006520	Root Summer glycyrrhizin high producing strain	0.431
DRR006521	Root Winter glycyrrhizin high producing strain	2.879
DRR006522	Root Winter glycyrrhizin high producing strain	2.886
DRR006523	Root Summer glycyrrhizin low producing strain	0.493
DRR006524	Root Summer glycyrrhizin low producing strain	0.588
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.080
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.077

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.209
SRR2868004	Drought Stress(Tissue:root)	2.257
SRR2967015	Control (Tissue:root)	1.513

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	2.592
SRR9715740	Leave	2.230
SRR9715741	Leave	2.591
SRR9715739	Root	0.522
SRR9715742	Root	1.042
SRR9715743	Root	1.018

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.451
SRR8749028	MeJA induced 9h	0.700
SRR8749029	MeJA induced 9h	0.401
SRR8749030	Uninduced	1.249
SRR8749031	Uninduced	0.251
SRR8749032	Uninduced	0.096

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.834
SRR8400027	Control-Root	3.050