Gene detail information of Glyur000083s00006969.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47180.1 | 3.00E-149 | galactinol synthase 1 |
| NR | ABF66656.1 | 0 | galactinol synthase [Ammopiptanthus mongolicus] |
| COG | YP_004116387.1 | 9.00E-34 | glycosyl transferase family protein [Pantoea sp. At-9b] |
| Swissprot | tr|C7G304|GOLS2_SOLLC | 0 | Galactinol synthase 2 |
| trEMBL | tr|A0EVX3|A0EVX3_9FABA | 0 | Galactinol synthase {ECO:0000313|EMBL:ABF66656.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00083 | 185728 | 188422 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K18819 | GOLS | EC:2.4.1.123 | Galactose metabolism | map00052 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000083s00006969.1 | PF01501.15 | Glyco_transf_8 | 29 | 275 | 5.10E-69 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.286 |
| SRR1783600 | control | 0.290 |
| SRR1783602 | moderate drought stress | 0.583 |
| SRR1811619 | moderate drought stress | 0.599 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.195 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2245.035 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2196.112 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.402 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.406 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.243 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.196 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.092 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.060 |
| SRR2967015 | Control (Tissue:root) | 6.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.392 |
| SRR9715740 | Leave | 0.258 |
| SRR9715741 | Leave | 0.502 |
| SRR9715739 | Root | 3.667 |
| SRR9715742 | Root | 0.581 |
| SRR9715743 | Root | 1.268 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.068 |
| SRR8749031 | Uninduced | 0.042 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.421 |
| SRR8400027 | Control-Root | 0.639 |