Gene detail information of Glyur000083s00006977.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G26751.10shaggy-related kinase 11
NRCDP15204.10unnamed protein product [Coffea canephora]
COGYP_003265973.11.00E-11serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
Swissprottr|P43288|KSG1_ARATH0Shaggy-related protein kinase alpha
trEMBLtr|A0A068V400|A0A068V400_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_96 {ECO:0000313|EMBL:CDP15204.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00083226399231994-


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:4.5.4


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000083s00006977.1PF00069.20Pkinase882175.40E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control64.137
SRR1783600control64.601
SRR1783602moderate drought stress60.516
SRR1811619moderate drought stress60.045

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain67.644
DRR006520Root Summer glycyrrhizin high producing strain66.249
DRR006521Root Winter glycyrrhizin high producing strain32.032
DRR006522Root Winter glycyrrhizin high producing strain31.799
DRR006523Root Summer glycyrrhizin low producing strain58.054
DRR006524Root Summer glycyrrhizin low producing strain58.422
DRR006525Leaf Summer glycyrrhizin high producing strain19.939
DRR006526Leaf Summer glycyrrhizin high producing strain19.918

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)56.555
SRR2868004Drought Stress(Tissue:root)51.845
SRR2967015Control (Tissue:root)48.963

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave20.303
SRR9715740Leave25.103
SRR9715741Leave27.020
SRR9715739Root12.507
SRR9715742Root37.007
SRR9715743Root35.804

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h50.978
SRR8749028MeJA induced 9h39.201
SRR8749029MeJA induced 9h28.462
SRR8749030Uninduced39.150
SRR8749031Uninduced23.581
SRR8749032Uninduced18.691

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root60.011
SRR8400027Control-Root58.924

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved