Gene detail information of Glyur000083s00006984.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G09430.10ATP-citrate lyase A-3
NRXP_003521649.10PREDICTED: ATP-citrate synthase alpha chain protein 2 isoform X1 [Glycine max]
COGYP_004281831.15.00E-138ATP-grasp domain-containing protein [Desulfurobacterium thermolithotrophum DSM 11699]
Swissprottr|Q2QNG7|ACLA3_ORYSJ0ATP-citrate synthase alpha chain protein 3
trEMBLtr|I1JR24|I1JR24_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G38810.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00083256751260587+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01648ACLY EC:2.3.3.8 Citrate cycle (TCA cycle) map00020
Carbon fixation pathways in prokaryotesmap00720


Gene Ontology

molecular_function

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000083s00006984.1PF08442.5ATP-grasp_262031.70E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control22.150
SRR1783600control22.255
SRR1783602moderate drought stress25.636
SRR1811619moderate drought stress25.501

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain36.729
DRR006520Root Summer glycyrrhizin high producing strain36.419
DRR006521Root Winter glycyrrhizin high producing strain35.971
DRR006522Root Winter glycyrrhizin high producing strain34.091
DRR006523Root Summer glycyrrhizin low producing strain29.614
DRR006524Root Summer glycyrrhizin low producing strain29.646
DRR006525Leaf Summer glycyrrhizin high producing strain20.591
DRR006526Leaf Summer glycyrrhizin high producing strain20.380

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)62.071
SRR2868004Drought Stress(Tissue:root)77.184
SRR2967015Control (Tissue:root)95.172

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave30.687
SRR9715740Leave31.325
SRR9715741Leave43.101
SRR9715739Root11.251
SRR9715742Root26.482
SRR9715743Root21.272

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h28.054
SRR8749028MeJA induced 9h36.288
SRR8749029MeJA induced 9h28.054
SRR8749030Uninduced20.574
SRR8749031Uninduced21.175
SRR8749032Uninduced24.953

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root75.028
SRR8400027Control-Root74.486

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved