Gene detail information of Glyur000083s00006984.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT1G09430.1 | 0 | ATP-citrate lyase A-3 |
NR | XP_003521649.1 | 0 | PREDICTED: ATP-citrate synthase alpha chain protein 2 isoform X1 [Glycine max] |
COG | YP_004281831.1 | 5.00E-138 | ATP-grasp domain-containing protein [Desulfurobacterium thermolithotrophum DSM 11699] |
Swissprot | tr|Q2QNG7|ACLA3_ORYSJ | 0 | ATP-citrate synthase alpha chain protein 3 |
trEMBL | tr|I1JR24|I1JR24_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G38810.3} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00083 | 256751 | 260587 | + |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K01648 | ACLY | EC:2.3.3.8 | Citrate cycle (TCA cycle) | map00020 |
Carbon fixation pathways in prokaryotes | map00720 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000083s00006984.1 | PF08442.5 | ATP-grasp_2 | 6 | 203 | 1.70E-16 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 22.150 |
SRR1783600 | control | 22.255 |
SRR1783602 | moderate drought stress | 25.636 |
SRR1811619 | moderate drought stress | 25.501 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 36.729 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 36.419 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 35.971 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 34.091 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 29.614 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 29.646 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.591 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.380 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 62.071 |
SRR2868004 | Drought Stress(Tissue:root) | 77.184 |
SRR2967015 | Control (Tissue:root) | 95.172 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 30.687 |
SRR9715740 | Leave | 31.325 |
SRR9715741 | Leave | 43.101 |
SRR9715739 | Root | 11.251 |
SRR9715742 | Root | 26.482 |
SRR9715743 | Root | 21.272 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 28.054 |
SRR8749028 | MeJA induced 9h | 36.288 |
SRR8749029 | MeJA induced 9h | 28.054 |
SRR8749030 | Uninduced | 20.574 |
SRR8749031 | Uninduced | 21.175 |
SRR8749032 | Uninduced | 24.953 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 75.028 |
SRR8400027 | Control-Root | 74.486 |