Gene detail information of Glyur000083s00006985.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G01850.20S-adenosylmethionine synthetase 2
NRXP_007163296.10hypothetical protein PHAVU_001G222800g [Phaseolus vulgaris]
COGYP_008801702.12.00E-159S-adenosylmethionine synthetase [Exiguobacterium sp. MH3]
Swissprottr|Q307Y9|METK1_SOLTU0S-adenosylmethionine synthase 1
trEMBLtr|V7D197|V7D197_PHAVU0S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00083266527269130+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00789metK EC:2.5.1.6 Biosynthesis of amino acids map01230
Cysteine and methionine metabolismmap00270


Gene Ontology

biological_process

GO:0006556  S-adenosylmethionine biosynthetic process


molecular_function

GO:0004478  methionine adenosyltransferase activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000083s00006985.1PF00438.15S-AdoMet_synt_N251233.60E-41
Glyur000083s00006985.1PF02772.11S-AdoMet_synt_M1382602.30E-49
Glyur000083s00006985.1PF02773.11S-AdoMet_synt_C2624032.50E-68


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control341.151
SRR1783600control343.558
SRR1783602moderate drought stress798.628
SRR1811619moderate drought stress797.176

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain420.438
DRR006520Root Summer glycyrrhizin high producing strain415.886
DRR006521Root Winter glycyrrhizin high producing strain138.424
DRR006522Root Winter glycyrrhizin high producing strain134.969
DRR006523Root Summer glycyrrhizin low producing strain546.760
DRR006524Root Summer glycyrrhizin low producing strain552.411
DRR006525Leaf Summer glycyrrhizin high producing strain33.682
DRR006526Leaf Summer glycyrrhizin high producing strain34.244

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)99.555
SRR2868004Drought Stress(Tissue:root)126.829
SRR2967015Control (Tissue:root)114.021

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave100.910
SRR9715740Leave149.959
SRR9715741Leave178.479
SRR9715739Root681.916
SRR9715742Root414.562
SRR9715743Root444.462

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h64.230
SRR8749028MeJA induced 9h79.607
SRR8749029MeJA induced 9h53.402
SRR8749030Uninduced64.105
SRR8749031Uninduced32.572
SRR8749032Uninduced54.358

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root238.205
SRR8400027Control-Root191.515

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved