Gene detail information of Glyur000083s00006999.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G27870.11.00E-69Plant invertase/pectin methylesterase inhibitor superfamily
NRXP_006605257.10PREDICTED: putative pectinesterase/pectinesterase inhibitor 28-like [Glycine max]
COGYP_003997686.12.00E-41pectinesterase [Leadbetterella byssophila DSM 17132]
Swissprottr|Q3E8Z8|PME28_ARATH6.00E-81Pectinesterase 28
trEMBLtr|I1NBN0|I1NBN0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G41350.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00083335996338192+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCE8


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01051E3.1.1.11 EC:3.1.1.11 Pentose and glucuronate interconversions map00040


Gene Ontology

biological_process

GO:0042545  cell wall modification


cellular_component

GO:0005618  cell wall


molecular_function

GO:0004857  enzyme inhibitor activity

GO:0030599  pectinesterase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000083s00006999.1PF04043.10PMEI581761.10E-10
Glyur000083s00006999.1PF01095.14Pectinesterase2535576.20E-90


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.144
SRR1783600control0.153
SRR1783602moderate drought stress0.096
SRR1811619moderate drought stress0.085

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.194
DRR006520Root Summer glycyrrhizin high producing strain2.033
DRR006521Root Winter glycyrrhizin high producing strain0.126
DRR006522Root Winter glycyrrhizin high producing strain0.122
DRR006523Root Summer glycyrrhizin low producing strain0.062
DRR006524Root Summer glycyrrhizin low producing strain0.062
DRR006525Leaf Summer glycyrrhizin high producing strain5.802
DRR006526Leaf Summer glycyrrhizin high producing strain5.562

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.190
SRR2868004Drought Stress(Tissue:root)0.235
SRR2967015Control (Tissue:root)0.170

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.261
SRR9715740Leave0.577
SRR9715741Leave1.933
SRR9715739Root0.267
SRR9715742Root1.137
SRR9715743Root1.826

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.301
SRR8749028MeJA induced 9h0.800
SRR8749029MeJA induced 9h0.618
SRR8749030Uninduced0.449
SRR8749031Uninduced0.224
SRR8749032Uninduced0.350

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.459
SRR8400027Control-Root0.898

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved