Gene detail

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Gene detail information of Glyur000083s00007003.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G26610.3	9.00E-90	D111/G-patch domain-containing protein
NR	XP_003554597.1	0	PREDICTED: G patch domain-containing protein 8-like [Glycine max]
Swissprot	tr\|Q9SLC6\|STIP2_ARATH	5.00E-09	Septin and tuftelin-interacting protein 1 homolog 2
trEMBL	tr\|I1NBM6\|I1NBM6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G41310.1}

Sequence

Transcript Sequence

>Glyur000083s00007003.1
GATCCAGTGATTCTCTCATCAAATCTGAATATCTCATGCGGAAGACCGTGCGTTGAATCTAACCAGGACGAGATCCAAGCTGCGTTGTTTTGCCAGAACTTGAGCTCTCTTCACTATCATCACAAGATACAAAATGGATTTTCGATGGACCAATGGTAAGCAGGAAACTGGTGGCCGTGACAGGAGGCAATCTAAAAAGGAACAGGCATATGAGGAGTCCCTTATTAAGGATTTGGCAGAGGATTTTCGTTTGCCAATCAACCACAGGCCAACAGAAAATGTTGATCTGGACAATGTAGAACAAGCATCTCTGGACACACAGTTAACATCATCTAATATTGGCTTTAAGCTTCTCCAAAAGATGGGATGGAAAGGAAAGGGTCTTGGGAAGGATGAACAAGGAATCACTGAGCCAATAAAATCTGGGATTAGAGATCCAAGATTGGGGGTTGGTAAACAAGAAGAAGATGATTTTTTCACTGCAGAAGAAAATATCCAGCGAAGAAAACTTGATATTGAGTTGGAGGAGACAGAGGAGCATGTGAGGAAGCGGGAGGTGTTAGCTGAACGTGAGCAAAAAATTCAAACCGAGGTGAAAGAAATCCGAAAGGTGTTTTATTGTGATCTCTGCAACAAGCAGTACAAACTGGCAATGGAATTCGAAGCACACTTGAGCTCTTATGATCACAATCACAGAAAGCGCTTCAAAGAAATGAAGGAAATGCATGGCAGTAGTAGTCGGGATGATAGGCAAAAGCGAGAGCAGCAGCGTCAAGAGAGAGAAATGGCTAAGTTTGCTCAAATTGCTGATGCACAAAAGCAGCAACGGCTTCAACTGCAGCAAGAGTCTGGGTCACAACCAGTTCCCTCTGAAACTAGAACCGCCACTGCGCTTACAGATCAGGAGCAGCGGAACACTTTGAAGTTTGGGTTTTCTTCTAAAGGCAATGCTTCTAAGATCACGGTCGGTGCCAAGAAGCAAAATGTTGCAAAGAAGCAGAATGTTTCAGTGGCCTCTATATTTAATAACGATAGCGATGAAGAGTAATGGGAAGTTACTTATTCCAGCCCTTAATTAGCGTGTACCATAACTCCTGCGTGGTTTTGGTTTGGATGTGTTGTATTTGGTATTTATCACCACTGTTAGTTTAAGAGGGGAAAATTTGGGATTCTATGTCAGTTTGGAGAGTTGACTAGTTGAGTACAGACAGTCTCTATATGTTGGAAGGAAATACTGCCTGCTTATCTATGTAACAATGAATGTGTCCAAGGATTCTGTTTTATGATGATGTTGGCTTCCATTGATATTATGAATC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00083	353965	357415	-

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000083s00007003.1	PF01585.18	G-patch	67	107	3.80E-17
Glyur000083s00007003.1	PF12171.3	zf-C2H2_jaz	161	188	6.40E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.693
SRR1783600	control	20.919
SRR1783602	moderate drought stress	24.176
SRR1811619	moderate drought stress	24.177

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.229
DRR006520	Root Summer glycyrrhizin high producing strain	30.110
DRR006521	Root Winter glycyrrhizin high producing strain	87.522
DRR006522	Root Winter glycyrrhizin high producing strain	85.023
DRR006523	Root Summer glycyrrhizin low producing strain	37.944
DRR006524	Root Summer glycyrrhizin low producing strain	37.400
DRR006525	Leaf Summer glycyrrhizin high producing strain	67.014
DRR006526	Leaf Summer glycyrrhizin high producing strain	66.701

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	45.376
SRR2868004	Drought Stress(Tissue:root)	51.818
SRR2967015	Control (Tissue:root)	59.421

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	35.331
SRR9715740	Leave	57.009
SRR9715741	Leave	49.155
SRR9715739	Root	1.798
SRR9715742	Root	8.947
SRR9715743	Root	9.077

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.943
SRR8749028	MeJA induced 9h	27.457
SRR8749029	MeJA induced 9h	31.985
SRR8749030	Uninduced	26.613
SRR8749031	Uninduced	22.929
SRR8749032	Uninduced	24.004

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	42.865
SRR8400027	Control-Root	39.952