Gene detail information of Glyur000084s00009485.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G06920.1 | 3.00E-26 | ovate family protein 4 |
| NR | XP_003518343.1 | 0 | PREDICTED: uncharacterized protein LOC100780926 [Glycine max] |
| Swissprot | tr|O04351|OFP2_ARATH | 1.00E-35 | Transcription repressor OFP2 |
| trEMBL | tr|I1JHL4|I1JHL4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G40190.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00084 | 111350 | 112549 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | OFP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000084s00009485.1 | PF13724.1 | DNA_binding_2 | 1 | 53 | 4.80E-17 |
| Glyur000084s00009485.1 | PF04844.8 | Ovate | 338 | 395 | 2.50E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.490 |
| SRR1783600 | control | 3.626 |
| SRR1783602 | moderate drought stress | 2.962 |
| SRR1811619 | moderate drought stress | 3.095 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.526 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.450 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.384 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.323 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.549 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.437 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.497 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.320 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 12.274 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.368 |
| SRR2967015 | Control (Tissue:root) | 7.987 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.490 |
| SRR9715740 | Leave | 0.443 |
| SRR9715741 | Leave | 0.285 |
| SRR9715739 | Root | 0.135 |
| SRR9715742 | Root | 0.336 |
| SRR9715743 | Root | 0.191 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.711 |
| SRR8749028 | MeJA induced 9h | 0.944 |
| SRR8749029 | MeJA induced 9h | 2.506 |
| SRR8749030 | Uninduced | 0.106 |
| SRR8749031 | Uninduced | 0.064 |
| SRR8749032 | Uninduced | 0.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.495 |
| SRR8400027 | Control-Root | 7.641 |