Gene detail information of Glyur000084s00009493.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G05670.1 | 3.00E-30 | RING/U-box protein |
| NR | XP_004508644.1 | 0 | PREDICTED: uncharacterized protein LOC101504311 [Cicer arietinum] |
| Swissprot | tr|Q9SGH2|MBD9_ARATH | 4.00E-08 | Methyl-CpG-binding domain-containing protein 9 |
| trEMBL | tr|A0A072UQF4|A0A072UQF4_MEDTR | 0 | PHD-finger protein, putative {ECO:0000313|EMBL:KEH32064.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00084 | 173002 | 176235 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | PHD |
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000084s00009493.1 | PF00628.24 | PHD | 120 | 164 | 2.40E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.413 |
| SRR1783600 | control | 5.301 |
| SRR1783602 | moderate drought stress | 6.177 |
| SRR1811619 | moderate drought stress | 6.135 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.425 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.440 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.414 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.413 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.640 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.647 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.324 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.232 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.396 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.916 |
| SRR2967015 | Control (Tissue:root) | 8.820 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.267 |
| SRR9715740 | Leave | 6.090 |
| SRR9715741 | Leave | 4.357 |
| SRR9715739 | Root | 2.595 |
| SRR9715742 | Root | 3.849 |
| SRR9715743 | Root | 3.559 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.502 |
| SRR8749028 | MeJA induced 9h | 8.646 |
| SRR8749029 | MeJA induced 9h | 4.506 |
| SRR8749030 | Uninduced | 3.289 |
| SRR8749031 | Uninduced | 3.971 |
| SRR8749032 | Uninduced | 3.638 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.960 |
| SRR8400027 | Control-Root | 7.164 |