Gene detail information of Glyur000084s00009495.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G08139.13.00E-32RING/U-box superfamily protein
NRXP_004508643.10PREDICTED: E3 ubiquitin-protein ligase CIP8-like [Cicer arietinum]
Swissprottr|P0CH30|RING1_GOSHI4.00E-32E3 ubiquitin-protein ligase RING1
trEMBLtr|A0A072V1R8|A0A072V1R8_MEDTR1.00E-141Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:KEH32065.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00084180631181845+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000084s00009495.1PF13639.1zf-RING_23413821.90E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control27.347
SRR1783600control27.457
SRR1783602moderate drought stress21.293
SRR1811619moderate drought stress21.566

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain43.521
DRR006520Root Summer glycyrrhizin high producing strain43.438
DRR006521Root Winter glycyrrhizin high producing strain27.274
DRR006522Root Winter glycyrrhizin high producing strain26.744
DRR006523Root Summer glycyrrhizin low producing strain47.423
DRR006524Root Summer glycyrrhizin low producing strain48.200
DRR006525Leaf Summer glycyrrhizin high producing strain31.670
DRR006526Leaf Summer glycyrrhizin high producing strain31.559

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)39.159
SRR2868004Drought Stress(Tissue:root)37.890
SRR2967015Control (Tissue:root)37.501

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave38.156
SRR9715740Leave35.318
SRR9715741Leave46.304
SRR9715739Root84.131
SRR9715742Root59.293
SRR9715743Root61.381

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h26.410
SRR8749028MeJA induced 9h20.795
SRR8749029MeJA induced 9h18.658
SRR8749030Uninduced19.180
SRR8749031Uninduced15.368
SRR8749032Uninduced16.708

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root25.024
SRR8400027Control-Root28.002

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved